Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is 74316115

Identifier: 74316115

GI number: 74316115

Start: 103358

End: 104245

Strand: Reverse

Name: 74316115

Synonym: Tbd_0097

Alternate gene names: NA

Gene position: 104245-103358 (Counterclockwise)

Preceding gene: 74316120

Following gene: 74316110

Centisome position: 3.58

GC content: 68.92

Gene sequence:

>888_bases
ATGAATAGACTGTCCCTGCTGCCGCCCGGATTGTATCGAATTTGCCCGCGCCTTCCGCGACGGCCTGCGCGCCGGGCTGG
ACGATGGGCGAGCAAGCTGCATTCCAGCGTCGCGCTGATCCTGCTCGCGACCGCGCTCCCGGTCGAGGCCGACGTGGCCG
ACACGGTCGCCAAGGTCAAGCCCGCCGTCGTCGGCGTCGGCACCTTCCAGCCGACGGGCCGGCCGCGCGCCAACCTGCTC
GGCACCGGTTTCGCCGTGCTCGACGGCCGCCACGTCGTGTCGTGCGCGCACATTTTCGCCAAGCCGCTCGACACCGAGAA
AAAAGCCGTCCACGCCGTTTTCATCGGCCGCGACCGGCAGATGGCGGTGCGCAGCGCCCGCCTCGTCGCGACCGACAGCG
CGCGCGATCTCGCCCTGCTCCGGATCGACGGCGCCCCGCTGCCGACCCTCAAGCTCGGCGACTCGGCGCGCGCACGCGAA
GGCTGGCAACTCTACTTCACCGGCTATCCGATCGGTTCCATACTCGGGCTCAACGCCTCGACCCATCGCGCCGGGCTCGC
CGCGATCGTTCCGATATTCACGCCGATGCAAAGTGCCGACCAGCTCAATGCGCGCACCCTGAAGCAGGCGCGCGACGCCT
ACGAGGTATTCGAGCTCGACGCGATCGCCTACCCCGGAAACAGCGGCAGCCCGGTCTGGCACCCGGAGACGGGGGAGGTG
CTCGGCGTGCTCAATTCGGTCTACGTCAAAGGCGCGAAGGAAGCCGCGCTGTCGACGCCGAGCGGCATCAGCTACGCGAT
TCCGGTGAGCTACGTGCACGCGCTGCTGAAGCGCGCCGCGCTCGACGCAGCCGAGCCCAACGCATCCGAGCCCAACGCAT
CCGAGTAG

Upstream 100 bases:

>100_bases
AAACCGACAGTGCGCGTCTTCTTGCCGAATTCCACCGCCAAGGGCAGGCCGACGTAGCCCAGCCCGACAACCGCAACAAC
GCTCATGCTTGGATTCCCCT

Downstream 100 bases:

>100_bases
TCCGCGCCGTGCGCGCGGCCTACATGCCCTCGGCCAGGCTGAAGCCGAAACCGAGCGACTGTTGGCGGTGGTTGTAGTCG
ATCAGCGACTCGCCGTAGCC

Product: serine protease

Products: NA

Alternate protein names: Serine Protease; Peptidase; Trypsin Family Periplasmic Serine Protease; Protease Do

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MNRLSLLPPGLYRICPRLPRRPARRAGRWASKLHSSVALILLATALPVEADVADTVAKVKPAVVGVGTFQPTGRPRANLL
GTGFAVLDGRHVVSCAHIFAKPLDTEKKAVHAVFIGRDRQMAVRSARLVATDSARDLALLRIDGAPLPTLKLGDSARARE
GWQLYFTGYPIGSILGLNASTHRAGLAAIVPIFTPMQSADQLNARTLKQARDAYEVFELDAIAYPGNSGSPVWHPETGEV
LGVLNSVYVKGAKEAALSTPSGISYAIPVSYVHALLKRAALDAAEPNASEPNASE

Sequences:

>Translated_295_residues
MNRLSLLPPGLYRICPRLPRRPARRAGRWASKLHSSVALILLATALPVEADVADTVAKVKPAVVGVGTFQPTGRPRANLL
GTGFAVLDGRHVVSCAHIFAKPLDTEKKAVHAVFIGRDRQMAVRSARLVATDSARDLALLRIDGAPLPTLKLGDSARARE
GWQLYFTGYPIGSILGLNASTHRAGLAAIVPIFTPMQSADQLNARTLKQARDAYEVFELDAIAYPGNSGSPVWHPETGEV
LGVLNSVYVKGAKEAALSTPSGISYAIPVSYVHALLKRAALDAAEPNASEPNASE
>Mature_295_residues
MNRLSLLPPGLYRICPRLPRRPARRAGRWASKLHSSVALILLATALPVEADVADTVAKVKPAVVGVGTFQPTGRPRANLL
GTGFAVLDGRHVVSCAHIFAKPLDTEKKAVHAVFIGRDRQMAVRSARLVATDSARDLALLRIDGAPLPTLKLGDSARARE
GWQLYFTGYPIGSILGLNASTHRAGLAAIVPIFTPMQSADQLNARTLKQARDAYEVFELDAIAYPGNSGSPVWHPETGEV
LGVLNSVYVKGAKEAALSTPSGISYAIPVSYVHALLKRAALDAAEPNASEPNASE

Specific function: Unknown

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31405; Mature: 31405

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLSLLPPGLYRICPRLPRRPARRAGRWASKLHSSVALILLATALPVEADVADTVAKVK
CCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
PAVVGVGTFQPTGRPRANLLGTGFAVLDGRHVVSCAHIFAKPLDTEKKAVHAVFIGRDRQ
CCEEEECCCCCCCCCCCHHEECCEEEECCCHHHHHHHHHHCCCCCCHHEEEEEEECCCHH
MAVRSARLVATDSARDLALLRIDGAPLPTLKLGDSARAREGWQLYFTGYPIGSILGLNAS
HHHHHHEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCCCEEEEECCCHHHEEECCCC
THRAGLAAIVPIFTPMQSADQLNARTLKQARDAYEVFELDAIAYPGNSGSPVWHPETGEV
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCHH
LGVLNSVYVKGAKEAALSTPSGISYAIPVSYVHALLKRAALDAAEPNASEPNASE
HHHHHHHHHCCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNRLSLLPPGLYRICPRLPRRPARRAGRWASKLHSSVALILLATALPVEADVADTVAKVK
CCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
PAVVGVGTFQPTGRPRANLLGTGFAVLDGRHVVSCAHIFAKPLDTEKKAVHAVFIGRDRQ
CCEEEECCCCCCCCCCCHHEECCEEEECCCHHHHHHHHHHCCCCCCHHEEEEEEECCCHH
MAVRSARLVATDSARDLALLRIDGAPLPTLKLGDSARAREGWQLYFTGYPIGSILGLNAS
HHHHHHEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCCCEEEEECCCHHHEEECCCC
THRAGLAAIVPIFTPMQSADQLNARTLKQARDAYEVFELDAIAYPGNSGSPVWHPETGEV
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCHH
LGVLNSVYVKGAKEAALSTPSGISYAIPVSYVHALLKRAALDAAEPNASEPNASE
HHHHHHHHHCCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA