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The map label for this gene is rssA [H]

Identifier: 74316075

GI number: 74316075

Start: 59951

End: 60883

Strand: Reverse

Name: rssA [H]

Synonym: Tbd_0057

Alternate gene names: 74316075

Gene position: 60883-59951 (Counterclockwise)

Preceding gene: 74316076

Following gene: 74316072

Centisome position: 2.09

GC content: 71.38

Gene sequence:

>933_bases
GTGAGGCCGACTGAAGCCTTGGTGAGCGCGCCGCGCATCGGCCTCGCGCTCGGCAGCGGCTCGGCCCGCGGCTGGGCGCA
TATCGGCGTGCTGCGCGCGCTGGCCGAGGCCGGGGTCGAGCCCGACATCGTCTGCGGTACCTCGATCGGCGCGCTCGTCG
GCGCGGCCTACGCGGGCGGCGAGCTGGACCGGCTCGAAGCCTGGGTGCGCGAGCTGCGCCTGCAGTCGGTCGTGAGCTTC
CTCGATTTTTCGCTGAGCGGCGGCCTGATCAAGGGCGAAAGGCTGCTCGATTTTTTTCGCAGCCATTTCGTCGACCGCGA
CATCGGCGCGCTCGAGCGGCGGTTCGGCGCCGTCGCCACCGATCTGCGCAGCGGGCGCGAAGTCTGGCTCAGGGAGGGGC
TCGTTTCCGCGGCGGTGCGCGCGTCGATCGCGCTGCCCGGCCTGTTCACGCCAGCCCGGCACGGCGACACCTGGCTCGTC
GACGGCGGCCTGGTCAACCCGGTCCCGGTCTCGCTATGCCGCGCGATGGGCGCCGATATCGTGATCGCGGTCGACCTCAA
CGCCGATCTGCTCGGTCGTCATCTCAGGCGCCCGGTCGCGCCGGTCGCGCCGACCGTCGAGCCGGCGACAGCGCACACGC
TCTTCGAAAGAATCCAGGCCGGCGCGTCGCAATTCGCGCTGACGCGGCCGAACGGCTCGCGGCCGCCGCCGGTTCTCGAC
GTGCTCGCGAGCAGCATCAACATCATGCAGGTGCTGATCACGCGCAGCCGGCTCGCCGGAGAGCCCGCCGACGTCCTCGT
CATGCCGCTGCTGGCGGACGTCGGGCTCATGGAATTTCATCGCGCCGCCGTCGCGATCGACGCGGGACGCGCCGCCGTGG
CGGCAGTGCTCCAGCAGTTGCAACTGCGCGTGAACCACAGCGCAGCGCGCTGA

Upstream 100 bases:

>100_bases
CTCGGCCTCAAGGGCTGCACCGTGTTCCGGCCGAATCCGGTCACGGGCGCGATCCTCGCCGAGCCCGAGAGCGAGCGCGT
GCATTGCTGCGGGATCGAGC

Downstream 100 bases:

>100_bases
AATAAAAATCAGGCGCAGCGCGCTGAAATAAAAAACAGGCGCAGCGCGCTGAGACCAAAACCACGGCGCAGCGCCTGAAT
CAAAAACCAGGCCGCGCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MRPTEALVSAPRIGLALGSGSARGWAHIGVLRALAEAGVEPDIVCGTSIGALVGAAYAGGELDRLEAWVRELRLQSVVSF
LDFSLSGGLIKGERLLDFFRSHFVDRDIGALERRFGAVATDLRSGREVWLREGLVSAAVRASIALPGLFTPARHGDTWLV
DGGLVNPVPVSLCRAMGADIVIAVDLNADLLGRHLRRPVAPVAPTVEPATAHTLFERIQAGASQFALTRPNGSRPPPVLD
VLASSINIMQVLITRSRLAGEPADVLVMPLLADVGLMEFHRAAVAIDAGRAAVAAVLQQLQLRVNHSAAR

Sequences:

>Translated_310_residues
MRPTEALVSAPRIGLALGSGSARGWAHIGVLRALAEAGVEPDIVCGTSIGALVGAAYAGGELDRLEAWVRELRLQSVVSF
LDFSLSGGLIKGERLLDFFRSHFVDRDIGALERRFGAVATDLRSGREVWLREGLVSAAVRASIALPGLFTPARHGDTWLV
DGGLVNPVPVSLCRAMGADIVIAVDLNADLLGRHLRRPVAPVAPTVEPATAHTLFERIQAGASQFALTRPNGSRPPPVLD
VLASSINIMQVLITRSRLAGEPADVLVMPLLADVGLMEFHRAAVAIDAGRAAVAAVLQQLQLRVNHSAAR
>Mature_310_residues
MRPTEALVSAPRIGLALGSGSARGWAHIGVLRALAEAGVEPDIVCGTSIGALVGAAYAGGELDRLEAWVRELRLQSVVSF
LDFSLSGGLIKGERLLDFFRSHFVDRDIGALERRFGAVATDLRSGREVWLREGLVSAAVRASIALPGLFTPARHGDTWLV
DGGLVNPVPVSLCRAMGADIVIAVDLNADLLGRHLRRPVAPVAPTVEPATAHTLFERIQAGASQFALTRPNGSRPPPVLD
VLASSINIMQVLITRSRLAGEPADVLVMPLLADVGLMEFHRAAVAIDAGRAAVAAVLQQLQLRVNHSAAR

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=186, Percent_Identity=36.0215053763441, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI116256487, Length=186, Percent_Identity=36.0215053763441, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI260656037, Length=186, Percent_Identity=36.0215053763441, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI260656039, Length=186, Percent_Identity=36.0215053763441, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI260656043, Length=186, Percent_Identity=36.0215053763441, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI148727335, Length=185, Percent_Identity=35.1351351351351, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI148727290, Length=185, Percent_Identity=35.1351351351351, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI226510936, Length=297, Percent_Identity=43.0976430976431, Blast_Score=234, Evalue=8e-63,
Organism=Caenorhabditis elegans, GI193204778, Length=165, Percent_Identity=32.7272727272727, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71997289, Length=169, Percent_Identity=33.1360946745562, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71997299, Length=169, Percent_Identity=33.1360946745562, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 32787; Mature: 32787

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPTEALVSAPRIGLALGSGSARGWAHIGVLRALAEAGVEPDIVCGTSIGALVGAAYAGG
CCCHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHCCC
ELDRLEAWVRELRLQSVVSFLDFSLSGGLIKGERLLDFFRSHFVDRDIGALERRFGAVAT
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
DLRSGREVWLREGLVSAAVRASIALPGLFTPARHGDTWLVDGGLVNPVPVSLCRAMGADI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCE
VIAVDLNADLLGRHLRRPVAPVAPTVEPATAHTLFERIQAGASQFALTRPNGSRPPPVLD
EEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCHHHEEEECCCCCCCCHHHH
VLASSINIMQVLITRSRLAGEPADVLVMPLLADVGLMEFHRAAVAIDAGRAAVAAVLQQL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHH
QLRVNHSAAR
HHHHHHCCCC
>Mature Secondary Structure
MRPTEALVSAPRIGLALGSGSARGWAHIGVLRALAEAGVEPDIVCGTSIGALVGAAYAGG
CCCHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHCCC
ELDRLEAWVRELRLQSVVSFLDFSLSGGLIKGERLLDFFRSHFVDRDIGALERRFGAVAT
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
DLRSGREVWLREGLVSAAVRASIALPGLFTPARHGDTWLVDGGLVNPVPVSLCRAMGADI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCE
VIAVDLNADLLGRHLRRPVAPVAPTVEPATAHTLFERIQAGASQFALTRPNGSRPPPVLD
EEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCHHHEEEECCCCCCCCHHHH
VLASSINIMQVLITRSRLAGEPADVLVMPLLADVGLMEFHRAAVAIDAGRAAVAAVLQQL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHH
QLRVNHSAAR
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]