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The map label for this gene is atoC [C]

Identifier: 73543084

GI number: 73543084

Start: 3731588

End: 3732298

Strand: Reverse

Name: atoC [C]

Synonym: Reut_A3402

Alternate gene names: 73543084

Gene position: 3732298-3731588 (Counterclockwise)

Preceding gene: 73543085

Following gene: 73543083

Centisome position: 98.05

GC content: 64.56

Gene sequence:

>711_bases
ATGGCAACGATCCTCGTAGTCGATGACGAAATGGGAATCCGGGAACTGCTCTCGGAAATCCTGAGCGACGAAGGCCATGT
GGTCGAAGTCGCCGAGAACGCGCAGCAGGCACGCGAATACCGTTCGGGCACGACCCCTGATCTCGTGCTGCTCGATATCT
GGATGCCCGACACCGATGGCGTGACATTGCTCAAGGAGTGGTCCGCGCAAGGCCAGCTGACAATGCCGGTGATCATGATG
TCTGGCCATGCCACCATCGACACCGCGGTCGAGGCCACCAAGATCGGCGCGCTGAATTTCCTGGAAAAGCCGATCGCGCT
GCAGAAACTGCTGTCGGCAGTGGAGCAGGGCCTGGCCCGTGGTATCGAACGCCCGCGCGCAGCGCCCGCGGCAATGCCCG
CACCGGCGGCGCCGGCTATCGAAACCGCATTGGCACCGGCCTCTGCCGAGGCCAGCCTCGACGCCGCGGCCAACGGCAGC
AATGCCGCGCGCCCGCCCGAAGCCGAAATGCACTTCTCGTTCGACATGCCGCTGCGCGAGGCGCGGGACCTGTTCGAGCG
TGCCTACTTCGAGTACCACCTGGTGCGCGAACACGGCAGCATGACGCGCGTGGCCGAGAAGACCGGACTGGAACGTACGC
ACCTCTACCGCAAGCTCAAGCAGCTTGGCGTGGAGCTGGGCCGCAACAAGCAGGAACCTGCGGAGCAGTGA

Upstream 100 bases:

>100_bases
CGAGATCGTCGGTGCACAGATCTCGATCCTGTTCGTTAAACTGGCATAGTCAACTTGGCGGTCCGTCACGGAACGCTTTG
GTGGGGTTAAGAGGGGAAGT

Downstream 100 bases:

>100_bases
TGCAACGAACGCTTGACGGGCGCCGAATCCATTGATATAGTTTCGCTTCTTTGGCCCGGTAGCTCAGTCGGTAGAGCAGA
GGATTGAAAATCCTTGTGTC

Product: helix-turn-helix, Fis-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MATILVVDDEMGIRELLSEILSDEGHVVEVAENAQQAREYRSGTTPDLVLLDIWMPDTDGVTLLKEWSAQGQLTMPVIMM
SGHATIDTAVEATKIGALNFLEKPIALQKLLSAVEQGLARGIERPRAAPAAMPAPAAPAIETALAPASAEASLDAAANGS
NAARPPEAEMHFSFDMPLREARDLFERAYFEYHLVREHGSMTRVAEKTGLERTHLYRKLKQLGVELGRNKQEPAEQ

Sequences:

>Translated_236_residues
MATILVVDDEMGIRELLSEILSDEGHVVEVAENAQQAREYRSGTTPDLVLLDIWMPDTDGVTLLKEWSAQGQLTMPVIMM
SGHATIDTAVEATKIGALNFLEKPIALQKLLSAVEQGLARGIERPRAAPAAMPAPAAPAIETALAPASAEASLDAAANGS
NAARPPEAEMHFSFDMPLREARDLFERAYFEYHLVREHGSMTRVAEKTGLERTHLYRKLKQLGVELGRNKQEPAEQ
>Mature_235_residues
ATILVVDDEMGIRELLSEILSDEGHVVEVAENAQQAREYRSGTTPDLVLLDIWMPDTDGVTLLKEWSAQGQLTMPVIMMS
GHATIDTAVEATKIGALNFLEKPIALQKLLSAVEQGLARGIERPRAAPAAMPAPAAPAIETALAPASAEASLDAAANGSN
AARPPEAEMHFSFDMPLREARDLFERAYFEYHLVREHGSMTRVAEKTGLERTHLYRKLKQLGVELGRNKQEPAEQ

Specific function: Member of the two-component regulatory system RBE_0312/RBE_0470 [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=115, Percent_Identity=39.1304347826087, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1790437, Length=116, Percent_Identity=38.7931034482759, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790299, Length=137, Percent_Identity=32.8467153284672, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787375, Length=118, Percent_Identity=27.1186440677966, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786784, Length=118, Percent_Identity=31.3559322033898, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786911, Length=123, Percent_Identity=32.520325203252, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789809, Length=141, Percent_Identity=29.7872340425532, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788905, Length=117, Percent_Identity=35.8974358974359, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 25781; Mature: 25649

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATILVVDDEMGIRELLSEILSDEGHVVEVAENAQQAREYRSGTTPDLVLLDIWMPDTDG
CEEEEEECCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
VTLLKEWSAQGQLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLSAVEQGLAR
HHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIERPRAAPAAMPAPAAPAIETALAPASAEASLDAAANGSNAARPPEAEMHFSFDMPLRE
HHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCEEEEECCCHHH
ARDLFERAYFEYHLVREHGSMTRVAEKTGLERTHLYRKLKQLGVELGRNKQEPAEQ
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ATILVVDDEMGIRELLSEILSDEGHVVEVAENAQQAREYRSGTTPDLVLLDIWMPDTDG
EEEEEECCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
VTLLKEWSAQGQLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLSAVEQGLAR
HHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIERPRAAPAAMPAPAAPAIETALAPASAEASLDAAANGSNAARPPEAEMHFSFDMPLRE
HHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCEEEEECCCHHH
ARDLFERAYFEYHLVREHGSMTRVAEKTGLERTHLYRKLKQLGVELGRNKQEPAEQ
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA