Click here to switch to the map view.

The map label for this gene is ybdK [C]

Identifier: 73543018

GI number: 73543018

Start: 3646978

End: 3648093

Strand: Reverse

Name: ybdK [C]

Synonym: Reut_A3336

Alternate gene names: 73543018

Gene position: 3648093-3646978 (Counterclockwise)

Preceding gene: 73543019

Following gene: 73543009

Centisome position: 95.84

GC content: 63.53

Gene sequence:

>1116_bases
ATGTCGCTCGAACCGTTCAAGCATTCCGAAGCACTGACCTTCGGCGTCGAGCTGGAGCTGCAGCTTGTCAATCGGCATGA
CTATGACCTCGCGCCATTCGCGCCTGACCTGTTGCGCGCGCTCAAGGGCGCCCAGCATGCCGGCGATATCAAGCCCGAGA
TCAGCCCGTCGATGATCGAGATCAGCACGGGCATCTGCCACACCTACCAGCAGGCGCTGGACGAACTGACCACCATGCGC
GACCTGATGCAGGCCGCCTCTCGCTCGCTGAACATCGGCATCAGCGGAGGCGGCACGCATCCGTTCCAGCAATGGGCCGA
CCGCATCATTTCGGACTCCCCGCGCTACCAGTACATCTCGGAGCTGTACGGCTATCTCGCCAAGCAGTTCACGGTGTTCG
GCCAGCACGTCCATATCGGCTGCCCGAGCGCGGATGAGTCGCTGTTCCTGTTGCATGCCATCGGCCGCTACGTGCCGCAC
TTTGTTGCGCTCGCAGCCTCTTCGCCGTATGTGCAAGGGGTCGATACCGGCTTTGCGTCGGCGCGCCTCAACTCGGTCGC
GGCCTTCCCGATGAGCGGGCGCGCGCCGTTCCTGCTCACTTGGGACGCCTTTACCGCGTATTTCGAAAAAATGCGCAATA
CGGGCGTGATCGAGAGCATGAAGGACTTCTACTGGGATATCCGTCCCAAGCCCGAATTCGGCACGATCGAAGTGCGCGTG
ATGGACACGCCGCTGACCGTGGAGCGTGCCTGCGATATCGCCGCGTACATCCAGATGCTGGCGCGCTACCTGCTGCTGTC
GCGCCCGTTCATGCCGCAGGAAGACGATTACCTGGTCTACACCTTCAACCGCTTCCAGGCCTGCCGCTTCGGGCTGGAAG
GCGAATACGTGCACCCCAACGAGCTGACGCGCCGGCCAATCGCCGAGCACATCCTGTCGATCTGCGACGCGCTCGTGCCG
CACGCCGAGGCATTGGGGTCGATGCAGGCGCTGGCAAATATTCGTGCACTGGCCGAGAATCGCAACGGGGATGCCGAATG
GCTGCGCCAGGTCGACGCCGACGCGCGCACCCAGCGCGAAACGGTGCGGCAGGCCTGCGAGCGCTGGGCGGCTTGA

Upstream 100 bases:

>100_bases
TGGCTATCGAGCAACTGCTGGGCCCCGTGATCGCGGCCTGGGCGCTGCGCTTCGCCGGCGAAGTCCGTGCCGACCAGCGC
GGCAATGGAGGAGGGCGCTG

Downstream 100 bases:

>100_bases
CGCACCGCCCGGCCGCCACGGCCGCCTACTTCACGGAATAGCCGCGCCCCTGCATGCAGGCTCCCCAGGCCTGGTAGTAG
CTTGACATCGCCTGGCTGGT

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MSLEPFKHSEALTFGVELELQLVNRHDYDLAPFAPDLLRALKGAQHAGDIKPEISPSMIEISTGICHTYQQALDELTTMR
DLMQAASRSLNIGISGGGTHPFQQWADRIISDSPRYQYISELYGYLAKQFTVFGQHVHIGCPSADESLFLLHAIGRYVPH
FVALAASSPYVQGVDTGFASARLNSVAAFPMSGRAPFLLTWDAFTAYFEKMRNTGVIESMKDFYWDIRPKPEFGTIEVRV
MDTPLTVERACDIAAYIQMLARYLLLSRPFMPQEDDYLVYTFNRFQACRFGLEGEYVHPNELTRRPIAEHILSICDALVP
HAEALGSMQALANIRALAENRNGDAEWLRQVDADARTQRETVRQACERWAA

Sequences:

>Translated_371_residues
MSLEPFKHSEALTFGVELELQLVNRHDYDLAPFAPDLLRALKGAQHAGDIKPEISPSMIEISTGICHTYQQALDELTTMR
DLMQAASRSLNIGISGGGTHPFQQWADRIISDSPRYQYISELYGYLAKQFTVFGQHVHIGCPSADESLFLLHAIGRYVPH
FVALAASSPYVQGVDTGFASARLNSVAAFPMSGRAPFLLTWDAFTAYFEKMRNTGVIESMKDFYWDIRPKPEFGTIEVRV
MDTPLTVERACDIAAYIQMLARYLLLSRPFMPQEDDYLVYTFNRFQACRFGLEGEYVHPNELTRRPIAEHILSICDALVP
HAEALGSMQALANIRALAENRNGDAEWLRQVDADARTQRETVRQACERWAA
>Mature_370_residues
SLEPFKHSEALTFGVELELQLVNRHDYDLAPFAPDLLRALKGAQHAGDIKPEISPSMIEISTGICHTYQQALDELTTMRD
LMQAASRSLNIGISGGGTHPFQQWADRIISDSPRYQYISELYGYLAKQFTVFGQHVHIGCPSADESLFLLHAIGRYVPHF
VALAASSPYVQGVDTGFASARLNSVAAFPMSGRAPFLLTWDAFTAYFEKMRNTGVIESMKDFYWDIRPKPEFGTIEVRVM
DTPLTVERACDIAAYIQMLARYLLLSRPFMPQEDDYLVYTFNRFQACRFGLEGEYVHPNELTRRPIAEHILSICDALVPH
AEALGSMQALANIRALAENRNGDAEWLRQVDADARTQRETVRQACERWAA

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=371, Percent_Identity=44.743935309973, Blast_Score=347, Evalue=6e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 41804; Mature: 41673

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLEPFKHSEALTFGVELELQLVNRHDYDLAPFAPDLLRALKGAQHAGDIKPEISPSMIE
CCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEE
ISTGICHTYQQALDELTTMRDLMQAASRSLNIGISGGGTHPFQQWADRIISDSPRYQYIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHH
ELYGYLAKQFTVFGQHVHIGCPSADESLFLLHAIGRYVPHFVALAASSPYVQGVDTGFAS
HHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
ARLNSVAAFPMSGRAPFLLTWDAFTAYFEKMRNTGVIESMKDFYWDIRPKPEFGTIEVRV
HHHHHHEECCCCCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEE
MDTPLTVERACDIAAYIQMLARYLLLSRPFMPQEDDYLVYTFNRFQACRFGLEGEYVHPN
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHCCCCCCEECCH
ELTRRPIAEHILSICDALVPHAEALGSMQALANIRALAENRNGDAEWLRQVDADARTQRE
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHH
TVRQACERWAA
HHHHHHHHHCC
>Mature Secondary Structure 
SLEPFKHSEALTFGVELELQLVNRHDYDLAPFAPDLLRALKGAQHAGDIKPEISPSMIE
CCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEE
ISTGICHTYQQALDELTTMRDLMQAASRSLNIGISGGGTHPFQQWADRIISDSPRYQYIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHH
ELYGYLAKQFTVFGQHVHIGCPSADESLFLLHAIGRYVPHFVALAASSPYVQGVDTGFAS
HHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
ARLNSVAAFPMSGRAPFLLTWDAFTAYFEKMRNTGVIESMKDFYWDIRPKPEFGTIEVRV
HHHHHHEECCCCCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEE
MDTPLTVERACDIAAYIQMLARYLLLSRPFMPQEDDYLVYTFNRFQACRFGLEGEYVHPN
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHCCCCCCEECCH
ELTRRPIAEHILSICDALVPHAEALGSMQALANIRALAENRNGDAEWLRQVDADARTQRE
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHH
TVRQACERWAA
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA