Click here to switch to the map view.

The map label for this gene is ydfH [C]

Identifier: 73542963

GI number: 73542963

Start: 3587522

End: 3588214

Strand: Direct

Name: ydfH [C]

Synonym: Reut_A3280

Alternate gene names: 73542963

Gene position: 3587522-3588214 (Clockwise)

Preceding gene: 73542962

Following gene: 73542964

Centisome position: 94.25

GC content: 67.1

Gene sequence:

>693_bases
ATGCCCGAGCATATCGATCCCGACATGACCGCCGAAGCGATTGCCGATGACATTGTCGCGGCGATCGTCTCGCACCGGCT
GCCTCCGGGCACCAAGCTGCGGGAGGAAGCCCTGGCCAGCGTCTACCGCGTGAGCCGCACCAAGGTGCGCGCGGCGCTGC
TGATGCTGTCCAAGGACAAGGTCATCCAGATCGTGCCGGACAAGGGCGCGTTCGTCGCCAAGCCGAGCGCCGAGGAAGCG
CGTGAGGTCTTCGCGGTGCGCCGCATCCTGGAAGCGGCGCTCGCGCGGGAGTTCGTCGCCAAGGCAAAGCCTGCGGACTA
CAAGCGAATCGACAAGCACCTGGCCTCCGAGCGCAAGTCGATCGAAGGCGTCGATGCCCAGACCCGCACGCGGCTGCTCG
GCGATTTCCACATCGTGCTGGCCGAAGTGGTCGGCAACAGCGTGCTGACCGAGATGATGCGCGAGCTGTCCGCGCGCAGC
GCGGTCATCACCATGCTGTACCAGTCGCGCCGCGATGCGGCGTGCTCGTCCGACGAGCACCGCGAGTTCATCGAAGCGGC
ACGTGCTGGCGATGTCGAGCGCGCGGTGGCGCTGATGGTCGACCACCTGAGCCACGTCGAGGCCGCCCTGCATTTCGAGG
AAAGCCCGCCAGCCGCGCGGGGCAAGGATCTGGTAGCGGCACTGCTCGCGTAA

Upstream 100 bases:

>100_bases
CCGACGCGGCCCACAATGCAGTGCCGGTGCCGTCCCCCGCGGCGGGGCGCTAGAATCTCGGCATTTCCCCAAACGCGCAG
GCCCTGCGCCCAAGCAAGCC

Downstream 100 bases:

>100_bases
CCGGCCTTGCCGCTTGACCCCGGTCAAAGCGTTTGCGGGGTCGCCGATGCAATATTGACCCCGCTCGTGAAGACGCGGGG
GCGCACTTCACGGGCACCGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Protein; GntR Family Regulatory Protein; GntR Domain-Containing Protein; Transcriptional Regulator Gntr Family; GntR Family Transcription Regulator Protein; Bacterial Regulatory Protein; GntR Family Transcription Regulator; GntR-Family Protein Transcriptional Regulator; Transcriptional Regulator MdcY Family Protein; Transcription Regulator Protein; FCD Domain Protein; Transcriptional Regulator GntR Family Protein; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family; Transcriptional Regulator GNTR Family

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MPEHIDPDMTAEAIADDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVPDKGAFVAKPSAEEA
REVFAVRRILEAALAREFVAKAKPADYKRIDKHLASERKSIEGVDAQTRTRLLGDFHIVLAEVVGNSVLTEMMRELSARS
AVITMLYQSRRDAACSSDEHREFIEAARAGDVERAVALMVDHLSHVEAALHFEESPPAARGKDLVAALLA

Sequences:

>Translated_230_residues
MPEHIDPDMTAEAIADDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVPDKGAFVAKPSAEEA
REVFAVRRILEAALAREFVAKAKPADYKRIDKHLASERKSIEGVDAQTRTRLLGDFHIVLAEVVGNSVLTEMMRELSARS
AVITMLYQSRRDAACSSDEHREFIEAARAGDVERAVALMVDHLSHVEAALHFEESPPAARGKDLVAALLA
>Mature_229_residues
PEHIDPDMTAEAIADDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVPDKGAFVAKPSAEEAR
EVFAVRRILEAALAREFVAKAKPADYKRIDKHLASERKSIEGVDAQTRTRLLGDFHIVLAEVVGNSVLTEMMRELSARSA
VITMLYQSRRDAACSSDEHREFIEAARAGDVERAVALMVDHLSHVEAALHFEESPPAARGKDLVAALLA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=142, Percent_Identity=27.4647887323944, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25238; Mature: 25107

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEHIDPDMTAEAIADDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDK
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VIQIVPDKGAFVAKPSAEEAREVFAVRRILEAALAREFVAKAKPADYKRIDKHLASERKS
EEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IEGVDAQTRTRLLGDFHIVLAEVVGNSVLTEMMRELSARSAVITMLYQSRRDAACSSDEH
CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
REFIEAARAGDVERAVALMVDHLSHVEAALHFEESPPAARGKDLVAALLA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
>Mature Secondary Structure 
PEHIDPDMTAEAIADDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDK
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VIQIVPDKGAFVAKPSAEEAREVFAVRRILEAALAREFVAKAKPADYKRIDKHLASERKS
EEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IEGVDAQTRTRLLGDFHIVLAEVVGNSVLTEMMRELSARSAVITMLYQSRRDAACSSDEH
CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
REFIEAARAGDVERAVALMVDHLSHVEAALHFEESPPAARGKDLVAALLA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA