| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is gspD [H]
Identifier: 73542913
GI number: 73542913
Start: 3539472
End: 3541886
Strand: Direct
Name: gspD [H]
Synonym: Reut_A3229
Alternate gene names: 73542913
Gene position: 3539472-3541886 (Clockwise)
Preceding gene: 73542912
Following gene: 73542914
Centisome position: 92.98
GC content: 67.54
Gene sequence:
>2415_bases ATGAAAACCGAAGCCACCCGACCCTTCTTCCAGACCGCCAGTGCCCGTGCCGTGGCCCTGCTGTGCGGCCTTTCGCTGCT GGCGCCGACGCCGCTGTGGGCGCAGCAGCCCGCCAGCCCTGGCGCGCCACCGGACATCACGCCGCGCAACCGGGACCAGG TGGTGCTGAACTTCGTCAACGCCGACCTCGATTCCGTGGTCAAAGCCGTAGGCCAGGCCACCGGCAAGAATTTCGTGATC GACCCGCGCGTGAAGGGCACCGTCAATCTCGTCACCGAGCAGCCGGTCTCGCGCGCGCAGGCGCTCGAAACGCTGGGCTC GGTACTGCGCATGCAGGGCTATGCGATGGTGGAGAGCAATGGCTTCACCAAGGTCGTGCCCGAAGCGGACGCCAAGCTGC AGGGGTCGCCGATCGTGGTCGGCGGCGGGGGCGGCCGCGGCGACCAGGTGGTGACGCAGGTGTTCCGGCTGAACTACGAG TCGGCCAACAACCTGGTGCCGGTGCTGCGGCCGATGATCGCGCCCAACAACACCATCACCGCCTACCCGGCCAACAACAC GCTGGTGATCACGGACTATGCCGAGAACCTGCGCCGCCTCGGCCGCATCATCGCCGCGATCGATGCGCCGGCGGCGGGCG AAGTCGAGCTCGTACCGCTGAAGAATGCCATCGCCAGTGACACGGCGCTGGTGCTGCAGAAGCTGCTCGACCCGGGATCG GCGACGACGGGCGCGGCGGGAGGCGGCGGGGCGTCCGTCGACAGCAGCCTGCGCACGACCGTGGTGGCGGAGCCACGCAG CAACTCGCTGATGATCCGTGCAACAAGCCGCGCGCGCCTGCAGCAGGCACGCATGCTCATCGAAAAGCTCGACCAGCCTT ATGCGCGCCCCGGCAATATCTGGGTCGTGCCGCTCAAGAACGCCGACGCCGTCAAGCTGGCCGCCACGCTGCGCGCGATC GTCGCCGCCGACAGCAGCTTTGCCACAAGCACGCAACCGGGCGCCGCGGGCGCGGCAGGGGCCGGCGGACTGACCAACGT GTCGACGCCGGCCGGCGGCCAGTACACCGGCGGCACCACGGCAAGCCAGGCCGGCATGCGCTCGACCGGCACCAGCGGGT CGAGCACGGGCGGCGGCGCCTATGGCAATTCGGCGTTCGCGGCATCGTTCAACCCAAACACCCAGCCGACCACAGGCGGC ATCATCCAGGCCGATCCGGCCACCAATGCCCTGATCATTACGGCCACCGAACCGGTGTACCGCAACCTGCGCGCCGTGAT CGAGGATCTCGACGCGCGCCGCGCGCAGGTCTACATCGAATCGATGATCGTGGAAGTGACCTCCACGCAAGCCAGCCAGC TCGGCATCCAGTGGCAAGGACTGCTCAGTTCGAGCAGCGGCAACAACAACGTCTTCGCGGGTACCAACTTTGGCACGGGC GGCCAGAACATCCTGAACCTGACACTCGCCGGCGCGCTGTACAACAGCAACCACAGTGCCGGCATCGTTGCCGCGCAGCA GCTCGTGCCCGATGTGGGTGGCCTGAACCTTGGCGTGGTGAACAAGGCGCTGGGCCTTGGCGCGCTGCTCCGCGCGCTGG GCACCAACGGCAGCGTGAACCTGCTGTCGACGCCAAACCTGATCACGCTCGAGAACGAGGAAGCCAAGATCCTGATCGGC CAGAACATCCCGATCACGACCGGCTCCTATGCACAGACCGGCGGCGCTGCCTCTGTCACCCCGTTCCAGACCTTCGACCG CAAGGATGTCGGCATCACGCTGCGCGTGCGGCCGCAGATCACCGACGGGGGCCTGGTCAAGATGCAGATCTTCCAGGAGT CGTCGTCGGTGGTGCCGGGTACGCTGACGCAGGTGCAGGGCCCGACCACCAATGTGCGCTCGATCGAGACCAACGTCCTT GTCGACGACGGCCAGATCATCGTGCTCGGCGGGCTGATCGAGGATTCCTACGGCGACGGTGTGCAGAAGGTGCCGCTGCT GGGCGATATCCCGTGGATCGGCGGCCTGTTCCGCTATGAGAACAAGAACCGCGCCAAGACCAACCTGCTGGTGTTCCTGC GCCCGTATGTGATGCGCACGGCCGGCGCGGCCGACCGGTTGACGCAGGACCGCTACGATTACATGCGCGCGCAGCAGACC GACTTCGTCTCGCCTAACATCATGGTGCGCGACGCCAACACGCCGGTGCTGCCGCCCGCGGATGCGCCGACCACGCCGTT CGTCGACCCGCGTGGCAACGGGCCGGTGCAAAGTCCGCTGCCACTGCCGCAATCCGTGCCGCAGACTGCACCGGGGCAGC AAGCGCCGCAACCAGTGCCGCAGCCGATTACGCAGCAAGGCTATCCCGGCACGTTCGCGGGCTCGGCATCGCCCGACGCC GGCCGCCGTAACTGA
Upstream 100 bases:
>100_bases CAGCTGGTCAGCCTGCTGAGCCTGCTGGGACGACGAGAGAACAATGTGACAAGGCTGCGCTTCTGAGCCAGGCAGCGCCA GGAGCCGACCGGAACCAAAC
Downstream 100 bases:
>100_bases GCCAGACCATGGCAAGCGAAGTCCAAGCCGCCCTTGACAGCCAGGATATTCAGGAGCCGCCGTCACCGATGGCGGCGCGC CTGGTGTCGTACAGCTTTGC
Product: type II and III secretion system protein:NolW-like
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 804; Mature: 804
Protein sequence:
>804_residues MKTEATRPFFQTASARAVALLCGLSLLAPTPLWAQQPASPGAPPDITPRNRDQVVLNFVNADLDSVVKAVGQATGKNFVI DPRVKGTVNLVTEQPVSRAQALETLGSVLRMQGYAMVESNGFTKVVPEADAKLQGSPIVVGGGGGRGDQVVTQVFRLNYE SANNLVPVLRPMIAPNNTITAYPANNTLVITDYAENLRRLGRIIAAIDAPAAGEVELVPLKNAIASDTALVLQKLLDPGS ATTGAAGGGGASVDSSLRTTVVAEPRSNSLMIRATSRARLQQARMLIEKLDQPYARPGNIWVVPLKNADAVKLAATLRAI VAADSSFATSTQPGAAGAAGAGGLTNVSTPAGGQYTGGTTASQAGMRSTGTSGSSTGGGAYGNSAFAASFNPNTQPTTGG IIQADPATNALIITATEPVYRNLRAVIEDLDARRAQVYIESMIVEVTSTQASQLGIQWQGLLSSSSGNNNVFAGTNFGTG GQNILNLTLAGALYNSNHSAGIVAAQQLVPDVGGLNLGVVNKALGLGALLRALGTNGSVNLLSTPNLITLENEEAKILIG QNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVRPQITDGGLVKMQIFQESSSVVPGTLTQVQGPTTNVRSIETNVL VDDGQIIVLGGLIEDSYGDGVQKVPLLGDIPWIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAADRLTQDRYDYMRAQQT DFVSPNIMVRDANTPVLPPADAPTTPFVDPRGNGPVQSPLPLPQSVPQTAPGQQAPQPVPQPITQQGYPGTFAGSASPDA GRRN
Sequences:
>Translated_804_residues MKTEATRPFFQTASARAVALLCGLSLLAPTPLWAQQPASPGAPPDITPRNRDQVVLNFVNADLDSVVKAVGQATGKNFVI DPRVKGTVNLVTEQPVSRAQALETLGSVLRMQGYAMVESNGFTKVVPEADAKLQGSPIVVGGGGGRGDQVVTQVFRLNYE SANNLVPVLRPMIAPNNTITAYPANNTLVITDYAENLRRLGRIIAAIDAPAAGEVELVPLKNAIASDTALVLQKLLDPGS ATTGAAGGGGASVDSSLRTTVVAEPRSNSLMIRATSRARLQQARMLIEKLDQPYARPGNIWVVPLKNADAVKLAATLRAI VAADSSFATSTQPGAAGAAGAGGLTNVSTPAGGQYTGGTTASQAGMRSTGTSGSSTGGGAYGNSAFAASFNPNTQPTTGG IIQADPATNALIITATEPVYRNLRAVIEDLDARRAQVYIESMIVEVTSTQASQLGIQWQGLLSSSSGNNNVFAGTNFGTG GQNILNLTLAGALYNSNHSAGIVAAQQLVPDVGGLNLGVVNKALGLGALLRALGTNGSVNLLSTPNLITLENEEAKILIG QNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVRPQITDGGLVKMQIFQESSSVVPGTLTQVQGPTTNVRSIETNVL VDDGQIIVLGGLIEDSYGDGVQKVPLLGDIPWIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAADRLTQDRYDYMRAQQT DFVSPNIMVRDANTPVLPPADAPTTPFVDPRGNGPVQSPLPLPQSVPQTAPGQQAPQPVPQPITQQGYPGTFAGSASPDA GRRN >Mature_804_residues MKTEATRPFFQTASARAVALLCGLSLLAPTPLWAQQPASPGAPPDITPRNRDQVVLNFVNADLDSVVKAVGQATGKNFVI DPRVKGTVNLVTEQPVSRAQALETLGSVLRMQGYAMVESNGFTKVVPEADAKLQGSPIVVGGGGGRGDQVVTQVFRLNYE SANNLVPVLRPMIAPNNTITAYPANNTLVITDYAENLRRLGRIIAAIDAPAAGEVELVPLKNAIASDTALVLQKLLDPGS ATTGAAGGGGASVDSSLRTTVVAEPRSNSLMIRATSRARLQQARMLIEKLDQPYARPGNIWVVPLKNADAVKLAATLRAI VAADSSFATSTQPGAAGAAGAGGLTNVSTPAGGQYTGGTTASQAGMRSTGTSGSSTGGGAYGNSAFAASFNPNTQPTTGG IIQADPATNALIITATEPVYRNLRAVIEDLDARRAQVYIESMIVEVTSTQASQLGIQWQGLLSSSSGNNNVFAGTNFGTG GQNILNLTLAGALYNSNHSAGIVAAQQLVPDVGGLNLGVVNKALGLGALLRALGTNGSVNLLSTPNLITLENEEAKILIG QNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVRPQITDGGLVKMQIFQESSSVVPGTLTQVQGPTTNVRSIETNVL VDDGQIIVLGGLIEDSYGDGVQKVPLLGDIPWIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAADRLTQDRYDYMRAQQT DFVSPNIMVRDANTPVLPPADAPTTPFVDPRGNGPVQSPLPLPQSVPQTAPGQQAPQPVPQPITQQGYPGTFAGSASPDA GRRN
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG1450
COG function: function code NU; Type II secretory pathway, component PulD
Gene ontology:
Cell location: Cell outer membrane (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI87082242, Length=669, Percent_Identity=32.4364723467862, Blast_Score=290, Evalue=2e-79, Organism=Escherichia coli, GI1789793, Length=302, Percent_Identity=26.4900662251656, Blast_Score=89, Evalue=1e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR004846 - InterPro: IPR013356 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]
EC number: NA
Molecular weight: Translated: 83690; Mature: 83690
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTEATRPFFQTASARAVALLCGLSLLAPTPLWAQQPASPGAPPDITPRNRDQVVLNFVN CCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC ADLDSVVKAVGQATGKNFVIDPRVKGTVNLVTEQPVSRAQALETLGSVLRMQGYAMVESN CCHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEECC GFTKVVPEADAKLQGSPIVVGGGGGRGDQVVTQVFRLNYESANNLVPVLRPMIAPNNTIT CCEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEE AYPANNTLVITDYAENLRRLGRIIAAIDAPAAGEVELVPLKNAIASDTALVLQKLLDPGS EECCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCC ATTGAAGGGGASVDSSLRTTVVAEPRSNSLMIRATSRARLQQARMLIEKLDQPYARPGNI CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCE WVVPLKNADAVKLAATLRAIVAADSSFATSTQPGAAGAAGAGGLTNVSTPAGGQYTGGTT EEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ASQAGMRSTGTSGSSTGGGAYGNSAFAASFNPNTQPTTGGIIQADPATNALIITATEPVY HHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCHHH RNLRAVIEDLDARRAQVYIESMIVEVTSTQASQLGIQWQGLLSSSSGNNNVFAGTNFGTG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEEEECCCCCCCEEECCCCCCC GQNILNLTLAGALYNSNHSAGIVAAQQLVPDVGGLNLGVVNKALGLGALLRALGTNGSVN CCCEEEEEEEEEEECCCCCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE LLSTPNLITLENEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVRPQI EEECCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEEECCC TDGGLVKMQIFQESSSVVPGTLTQVQGPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDG CCCCEEEEEEEECCCCCCCCCHHCCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCCC VQKVPLLGDIPWIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAADRLTQDRYDYMRAQQT CEECCCCCCCCCCCCEEEECCCCCCCEEEEEEEEHHHHHHCCCHHHHHHHHHHHHHHCCC DFVSPNIMVRDANTPVLPPADAPTTPFVDPRGNGPVQSPLPLPQSVPQTAPGQQAPQPVP CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QPITQQGYPGTFAGSASPDAGRRN CCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKTEATRPFFQTASARAVALLCGLSLLAPTPLWAQQPASPGAPPDITPRNRDQVVLNFVN CCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC ADLDSVVKAVGQATGKNFVIDPRVKGTVNLVTEQPVSRAQALETLGSVLRMQGYAMVESN CCHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEECC GFTKVVPEADAKLQGSPIVVGGGGGRGDQVVTQVFRLNYESANNLVPVLRPMIAPNNTIT CCEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEE AYPANNTLVITDYAENLRRLGRIIAAIDAPAAGEVELVPLKNAIASDTALVLQKLLDPGS EECCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCC ATTGAAGGGGASVDSSLRTTVVAEPRSNSLMIRATSRARLQQARMLIEKLDQPYARPGNI CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCE WVVPLKNADAVKLAATLRAIVAADSSFATSTQPGAAGAAGAGGLTNVSTPAGGQYTGGTT EEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ASQAGMRSTGTSGSSTGGGAYGNSAFAASFNPNTQPTTGGIIQADPATNALIITATEPVY HHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCHHH RNLRAVIEDLDARRAQVYIESMIVEVTSTQASQLGIQWQGLLSSSSGNNNVFAGTNFGTG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEEEECCCCCCCEEECCCCCCC GQNILNLTLAGALYNSNHSAGIVAAQQLVPDVGGLNLGVVNKALGLGALLRALGTNGSVN CCCEEEEEEEEEEECCCCCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE LLSTPNLITLENEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVRPQI EEECCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEEECCC TDGGLVKMQIFQESSSVVPGTLTQVQGPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDG CCCCEEEEEEEECCCCCCCCCHHCCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCCC VQKVPLLGDIPWIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAADRLTQDRYDYMRAQQT CEECCCCCCCCCCCCEEEECCCCCCCEEEEEEEEHHHHHHCCCHHHHHHHHHHHHHHCCC DFVSPNIMVRDANTPVLPPADAPTTPFVDPRGNGPVQSPLPLPQSVPQTAPGQQAPQPVP CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QPITQQGYPGTFAGSASPDAGRRN CCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]