Click here to switch to the map view.

The map label for this gene is sdsB [H]

Identifier: 73542456

GI number: 73542456

Start: 3039965

End: 3040891

Strand: Reverse

Name: sdsB [H]

Synonym: Reut_A2771

Alternate gene names: 73542456

Gene position: 3040891-3039965 (Counterclockwise)

Preceding gene: 73542458

Following gene: 73542453

Centisome position: 79.89

GC content: 66.34

Gene sequence:

>927_bases
ATGGACCTTCGCCGGCTCAGCCATGTGGTTGCCCTTGCCGACACGCTGCACTTCGCACGTGCAGCCGAGCAAGTGCACCT
TAGTCAACCCGCGTTCAGCCGAAGCATCCAGGCGGTCGAAAACGATCTCGGGGTGCGCCTGTTCGAGCGTGATGTGGGGG
ATATCCGGCCGACGCCGGCCGGTGAGTTCGTGCTCGAACGTGCCAGGCGGCTGCTGTTCGAGGCCCGCTGCATGCAGCGC
GACGTCGATCTCTACCTCGACAATCAACTTGGAGACACGGCTTTCGGCGTCGGGCCGTTCCCCGCCGCGACCCTGATGCC
GCGCGTGCTGACGGAACTGCGGCGCCTGCATCCGCAGGTCGCCTTGCGCGTTGAAGAGAGCAACTGGGTACTGTTGCTTG
AGCGTTTGCGTGCCGAGGACATTGAGTTCTTTGTCGCTGACGTACGCGACTTGCCCGATGACGACGCGCTGGACATCCGG
CCGCTGCCGGCGCAGGCCGCACGCTTCTTTGTCCGCGCGGGGCATCCGCTCGCCGGTACGTCATGCACGATCAAGGCTGC
GTGGGCGTACGGCGTCGCCGCCGTCAAGGCGCCGCGCGCTGTAACGGCGGCGCTGACGAAAGCCTTGGGATTGCCCGCCG
GTCAGGAAGCCGTCCTGGCGCTCGAGTGCGACGATTTCGCCGTGATCCGGGCGGTCACCCTGTCCACGGACATGGTGCTC
GGCGCGACAGAAGCAGCGGTAGAGGCGCAGGTGGCTTCGGGCGAACTGGTACCGCTCGACGTCGAGGGGCTTCCCACGCT
GCATGCCGGCATGGGTATTGTGAGCCTGCGCAATCGCACGCCGTCGCCCATGGCGATGAAGGCGATGCGTTGCATCGAGC
GCGTGGCAGGCGAGATCCACGGCGAGCGCAAGGCGTCGCCGCAATAG

Upstream 100 bases:

>100_bases
CCGGTAATGCTTTTTGTACGGACCACTCTAGGTTGGCGATATCGATGCGTCCAATGCATAATCGACATCATTCCAATGTG
CAAAACGCAATGAGAACGCC

Downstream 100 bases:

>100_bases
GCTGGCTTAGTGCCGACGGGTGGGTCACATGCCCGCCAGCCGCGCTACCTGCTGGACGTAGTCGGGTGCGACGCAATCGA
CGGACAGCCGCTCGGGCGTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MDLRRLSHVVALADTLHFARAAEQVHLSQPAFSRSIQAVENDLGVRLFERDVGDIRPTPAGEFVLERARRLLFEARCMQR
DVDLYLDNQLGDTAFGVGPFPAATLMPRVLTELRRLHPQVALRVEESNWVLLLERLRAEDIEFFVADVRDLPDDDALDIR
PLPAQAARFFVRAGHPLAGTSCTIKAAWAYGVAAVKAPRAVTAALTKALGLPAGQEAVLALECDDFAVIRAVTLSTDMVL
GATEAAVEAQVASGELVPLDVEGLPTLHAGMGIVSLRNRTPSPMAMKAMRCIERVAGEIHGERKASPQ

Sequences:

>Translated_308_residues
MDLRRLSHVVALADTLHFARAAEQVHLSQPAFSRSIQAVENDLGVRLFERDVGDIRPTPAGEFVLERARRLLFEARCMQR
DVDLYLDNQLGDTAFGVGPFPAATLMPRVLTELRRLHPQVALRVEESNWVLLLERLRAEDIEFFVADVRDLPDDDALDIR
PLPAQAARFFVRAGHPLAGTSCTIKAAWAYGVAAVKAPRAVTAALTKALGLPAGQEAVLALECDDFAVIRAVTLSTDMVL
GATEAAVEAQVASGELVPLDVEGLPTLHAGMGIVSLRNRTPSPMAMKAMRCIERVAGEIHGERKASPQ
>Mature_308_residues
MDLRRLSHVVALADTLHFARAAEQVHLSQPAFSRSIQAVENDLGVRLFERDVGDIRPTPAGEFVLERARRLLFEARCMQR
DVDLYLDNQLGDTAFGVGPFPAATLMPRVLTELRRLHPQVALRVEESNWVLLLERLRAEDIEFFVADVRDLPDDDALDIR
PLPAQAARFFVRAGHPLAGTSCTIKAAWAYGVAAVKAPRAVTAALTKALGLPAGQEAVLALECDDFAVIRAVTLSTDMVL
GATEAAVEAQVASGELVPLDVEGLPTLHAGMGIVSLRNRTPSPMAMKAMRCIERVAGEIHGERKASPQ

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=219, Percent_Identity=27.3972602739726, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI87081904, Length=268, Percent_Identity=27.9850746268657, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790399, Length=189, Percent_Identity=27.5132275132275, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI145693105, Length=180, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788887, Length=121, Percent_Identity=38.0165289256198, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI2367136, Length=96, Percent_Identity=36.4583333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788297, Length=149, Percent_Identity=28.8590604026846, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=177, Percent_Identity=30.5084745762712, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33509; Mature: 33509

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLRRLSHVVALADTLHFARAAEQVHLSQPAFSRSIQAVENDLGVRLFERDVGDIRPTPA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCCCC
GEFVLERARRLLFEARCMQRDVDLYLDNQLGDTAFGVGPFPAATLMPRVLTELRRLHPQV
HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
ALRVEESNWVLLLERLRAEDIEFFVADVRDLPDDDALDIRPLPAQAARFFVRAGHPLAGT
EEEECCCCEEEHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
SCTIKAAWAYGVAAVKAPRAVTAALTKALGLPAGQEAVLALECDDFAVIRAVTLSTDMVL
CEEEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEHEEEHHHCCCEE
GATEAAVEAQVASGELVPLDVEGLPTLHAGMGIVSLRNRTPSPMAMKAMRCIERVAGEIH
CCHHHHHHHHHCCCCEEEECCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHC
GERKASPQ
CCCCCCCC
>Mature Secondary Structure
MDLRRLSHVVALADTLHFARAAEQVHLSQPAFSRSIQAVENDLGVRLFERDVGDIRPTPA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCCCC
GEFVLERARRLLFEARCMQRDVDLYLDNQLGDTAFGVGPFPAATLMPRVLTELRRLHPQV
HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
ALRVEESNWVLLLERLRAEDIEFFVADVRDLPDDDALDIRPLPAQAARFFVRAGHPLAGT
EEEECCCCEEEHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
SCTIKAAWAYGVAAVKAPRAVTAALTKALGLPAGQEAVLALECDDFAVIRAVTLSTDMVL
CEEEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEHEEEHHHCCCEE
GATEAAVEAQVASGELVPLDVEGLPTLHAGMGIVSLRNRTPSPMAMKAMRCIERVAGEIH
CCHHHHHHHHHCCCCEEEECCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHC
GERKASPQ
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]