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The map label for this gene is rho [H]

Identifier: 73541806

GI number: 73541806

Start: 2333231

End: 2334493

Strand: Direct

Name: rho [H]

Synonym: Reut_A2118

Alternate gene names: 73541806

Gene position: 2333231-2334493 (Clockwise)

Preceding gene: 73541805

Following gene: 73541807

Centisome position: 61.3

GC content: 59.78

Gene sequence:

>1263_bases
ATGCACCTGACAGAACTCAAATCGCTTCACGTGTCTGCGCTTCTCGAAATGGCGGCAACGCTCGAGATCGACAACGCACA
GCGGATGCGCAAACAGGAACTCATGTTTGCGATCCTGAAGAAGCGCGCCAAGATGGGCGAAACCATCTACGGAGACGGCA
CCCTGGAAGTTTTGCCAGACGGCTTCGGTTTCCTGCGCTCGCCGGAAACGTCGTACCTGGCCAGCACGGACGATATCTAT
ATCAGCCCGTCGCAGATCCGCCGCTTCAACCTGCATACCGGCGATTCGATCGAAGGTGAAGTCCGCACGCCGAAGGACGG
CGAGCGCTACTTCGCACTGGTCAAGGTCGACAAGGTCAACGGCAATCCGCCGGAAGCGGTCAAGAACCGCATCATGTTCG
AGAACCTGACGCCGCTGCATCCGAACCGGCCGCTCCAGCTCGAACGCGACATCAAGGCGGAAGAAAACATCACCGGCCGG
ATCATCGACATGATCGCGCCGATTGGCCGCGGCCAGCGCGCACTGCTGGTGGCCTCGCCGAAGTCCGGCAAGACCGTGAT
GCTGCAGCATATTGCGCACGCCATTGCCAACAATCATCCGGAAGCCGACCTGTTCGTGCTGCTGATCGACGAGCGCCCGG
AAGAAGTGACCGAAATGCAGCGCTCGGTGCGCGGCGAAGTGGTCGCCTCCACGTTCGACGAACCGGCCATCCGCCACGTC
CAGGTGGCTGAAATGGTGATCGAGAAGGCCAAGCGCCTGGTCGAACTGAAGCGCGACGTGGTGATCCTGCTGGACTCGAT
TACGCGTCTGGCCCGCGCCTACAACACCGTGGTGCCGGCCTCCGGCAAGGTGCTGACCGGTGGTGTCGACGCCAACGCGC
TGCAACGCCCGAAGCGTTTCTTCGGTGCCGCGCGTAACCTGGAAGAAGGCGGTTCGCTGACCATCATCGCCACCGCGCTG
ATCGAAACCGGCAGCCGCATGGATGACGTGATCTACGAAGAGTTCAAGGGCACCGGCAATATGGAAGTGCACCTGGAACG
CCGACTCGCCGAAAAGCGTGTCTATCCGTCGATCAACCTGAACAAGTCCAGCACGCGCCGCGAAGAACTGCTGATCAAGC
CGGACATCCTCCAGAAGATCTGGATCCTGCGCAAGTTCATCTCGGACATGGACGAAGTGCAGGCGATGGAATTCATCCTG
GACAAGATGAAAGCGACGAAGAACAACGCAGAGTTTTTCGATATGATGCGCAGAGGCGGCTAA

Upstream 100 bases:

>100_bases
ATTGTGCTAAGATGCCACCAACAACTTCCCCGAGCGTTCGCTCATTTCTTCCCCCTTCCCTCTAGGTCTCGCCCGTCCGG
GCCTTCTGTACCCTTTGTCT

Downstream 100 bases:

>100_bases
GCCTCGGCATCTTCGCCCTGCGAACAAAAGGCGTGCCGCGGCACGCCTTTTTGTTTTTTGTCGTGTGGCCCGCGGCAACG
TTGCCCCCTCGCACCATGCT

Product: transcription termination factor Rho

Products: NA

Alternate protein names: ATP-dependent helicase Rho [H]

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MHLTELKSLHVSALLEMAATLEIDNAQRMRKQELMFAILKKRAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIY
ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGNPPEAVKNRIMFENLTPLHPNRPLQLERDIKAEENITGR
IIDMIAPIGRGQRALLVASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMQRSVRGEVVASTFDEPAIRHV
QVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATAL
IETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINLNKSSTRREELLIKPDILQKIWILRKFISDMDEVQAMEFIL
DKMKATKNNAEFFDMMRRGG

Sequences:

>Translated_420_residues
MHLTELKSLHVSALLEMAATLEIDNAQRMRKQELMFAILKKRAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIY
ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGNPPEAVKNRIMFENLTPLHPNRPLQLERDIKAEENITGR
IIDMIAPIGRGQRALLVASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMQRSVRGEVVASTFDEPAIRHV
QVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATAL
IETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINLNKSSTRREELLIKPDILQKIWILRKFISDMDEVQAMEFIL
DKMKATKNNAEFFDMMRRGG
>Mature_420_residues
MHLTELKSLHVSALLEMAATLEIDNAQRMRKQELMFAILKKRAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIY
ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGNPPEAVKNRIMFENLTPLHPNRPLQLERDIKAEENITGR
IIDMIAPIGRGQRALLVASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMQRSVRGEVVASTFDEPAIRHV
QVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATAL
IETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINLNKSSTRREELLIKPDILQKIWILRKFISDMDEVQAMEFIL
DKMKATKNNAEFFDMMRRGG

Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]

COG id: COG1158

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rho family [H]

Homologues:

Organism=Escherichia coli, GI1790217, Length=418, Percent_Identity=69.1387559808612, Blast_Score=606, Evalue=1e-175,

Paralogues:

None

Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR011129
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR011112
- InterPro:   IPR011113
- InterPro:   IPR004665 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF07498 Rho_N; PF07497 Rho_RNA_bind [H]

EC number: NA

Molecular weight: Translated: 47386; Mature: 47386

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLTELKSLHVSALLEMAATLEIDNAQRMRKQELMFAILKKRAKMGETIYGDGTLEVLPD
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEECCC
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
CCCCCCCCCCCEEECCCCEEECHHHHEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCC
GNPPEAVKNRIMFENLTPLHPNRPLQLERDIKAEENITGRIIDMIAPIGRGQRALLVASP
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECC
KSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMQRSVRGEVVASTFDEPAIRHV
CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHCCCCHHHHHH
QVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHH
FGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
HHHHCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCC
NKSSTRREELLIKPDILQKIWILRKFISDMDEVQAMEFILDKMKATKNNAEFFDMMRRGG
CCCCCHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MHLTELKSLHVSALLEMAATLEIDNAQRMRKQELMFAILKKRAKMGETIYGDGTLEVLPD
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEECCC
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
CCCCCCCCCCCEEECCCCEEECHHHHEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCC
GNPPEAVKNRIMFENLTPLHPNRPLQLERDIKAEENITGRIIDMIAPIGRGQRALLVASP
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECC
KSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMQRSVRGEVVASTFDEPAIRHV
CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHCCCCHHHHHH
QVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHH
FGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
HHHHCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCC
NKSSTRREELLIKPDILQKIWILRKFISDMDEVQAMEFILDKMKATKNNAEFFDMMRRGG
CCCCCHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 14500782 [H]