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The map label for this gene is hfq [H]

Identifier: 73541769

GI number: 73541769

Start: 2288440

End: 2288679

Strand: Reverse

Name: hfq [H]

Synonym: Reut_A2081

Alternate gene names: 73541769

Gene position: 2288679-2288440 (Counterclockwise)

Preceding gene: 73541770

Following gene: 73541768

Centisome position: 60.13

GC content: 55.42

Gene sequence:

>240_bases
ATGAGCAACAAAGGGCAACTGCTACAAGACCCGTTCCTGAACGCGCTGCGCAAAGAGCACGTGCCGGTTTCCATCTATCT
GGTCAATGGCATCAAGCTGCAAGGCAATATCGAATCGTTCGACCAATATGTCGTGCTCCTGCGTAACACCGTGACGCAGA
TGGTCTACAAGCATGCGATTTCCACCGTCGTCCCGGCTCGCGCGGTCAATTTCCGCGTGGATGATTCCGCCGAGGGCTGA

Upstream 100 bases:

>100_bases
TTTTTGATCTTTTTTCTGGCGCGAGCTTGCGCCGATTGACTTGAACCGGGGACTTCCGTCCCCATTATTCACCACTAAAC
CTATAAATTTGGAGTGTGCC

Downstream 100 bases:

>100_bases
TTTTCCTGCCGGCCGCAACGGCTTGCGGCCTCTGCCAGCCGACATCGTGCCAATGCCAGCCGGCGTTGCCGCGGTGCCGG
TCACCGGTTCGCAAGTGCGG

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARAVNFRVDDSAEG

Sequences:

>Translated_79_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARAVNFRVDDSAEG
>Mature_78_residues
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARAVNFRVDDSAEG

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=76, Percent_Identity=75, Blast_Score=123, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8858; Mature: 8727

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCCHHHHHHHHHHHCCCCEEEEEEECEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARAVNFRVDDSAEG
HHHCCCHHEEEECCCCCCC
>Mature Secondary Structure 
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCHHHHHHHHHHHCCCCEEEEEEECEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARAVNFRVDDSAEG
HHHCCCHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA