BacMap

Definition	Ralstonia eutropha JMP134 chromosome 1, complete sequence.
Accession	NC_007347
Length	3,806,533

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The map label for this gene is yxjF [H]

Identifier: 73541451

GI number: 73541451

Start: 1919046

End: 1919804

Strand: Direct

Name: yxjF [H]

Synonym: Reut_A1762

Alternate gene names: 73541451

Gene position: 1919046-1919804 (Clockwise)

Preceding gene: 73541450

Following gene: 73541452

Centisome position: 50.41

GC content: 65.88

Gene sequence:

>759_bases
GTGAATACTTCCCGAAGAATCGCGCTAGTCACGGGCGCCGGCAGCGGTGTCGGCCGGCTGACTGCGCTGGCACTGCTCGA
CGACGGATGGACGGTCGTACTTGCAGGCCGCCGTGCCGATCCGCTGCAAACGCTTGCCGCCGAAGCGGCCGCGCGAGGCC
AGACCGCACTGGCCGTACCAACCGACGTCACCGACCCCGCCAGCGTGCAGAGCCTGTTCGACACGATCGAGCGCGAGTTC
GGGCGGCTCGACATGCTGTTCAACAACGCAGGCGTCAATGCCCCCGCCGTGCCGATGGATGAACTGCCCCTGGACAAGTG
GTTCAACGTCATCAACACGAATGTGACCGGCGTGTTCCTGTGCGCGCGCGCCGCATTCGGCCTGATGCGCCGCCAGTCCC
CGCAGGGCGGACGCATCATCAACAACGGATCGGTCTCCGCGCACACGCCGCGTCCGTTCACAGCGCCCTACACTGCCAGC
AAGCATGCCGTCACCGGCCTGACCAAGGCCCTGGCGCTCGATGGCCGGGCCTTCAACATTGCCGCGGGCCAGATCGACAT
CGGCAATGCGTTGACCGAACTGTCGGAACGCATGACGCGTGGCGTGCTGCAGGCAAACGGCACGACGGCACCGGAGCCGA
TGATGGAAGCACGACATGTGGCGAATGCTGTGCGCCACATGGCATCGCTGCCGCTGGACGCCAATGTGCTGAACATGACA
GTCATGGCCAGCGCCATGCCATTCGTCGGCCGCGGCTGA

Upstream 100 bases:

>100_bases
TCACGGGCCACGGCGAAATCTCGCTGGTCGTTACTTTGCCCCGGCCGCTTCCCATCCTGTGCATCGTAAAAAAACACCCC
ATAACAATACGGAGACCACT

Downstream 100 bases:

>100_bases
CGGGAACAGGGCGCCCCGGGGCATCGCACGCCGGGGCACCACCAGAGTTGACACGAGTTGACCAGCATCCAGACGGAGAC
ACCCCATGCGCATCACCACA

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MNTSRRIALVTGAGSGVGRLTALALLDDGWTVVLAGRRADPLQTLAAEAAARGQTALAVPTDVTDPASVQSLFDTIEREF
GRLDMLFNNAGVNAPAVPMDELPLDKWFNVINTNVTGVFLCARAAFGLMRRQSPQGGRIINNGSVSAHTPRPFTAPYTAS
KHAVTGLTKALALDGRAFNIAAGQIDIGNALTELSERMTRGVLQANGTTAPEPMMEARHVANAVRHMASLPLDANVLNMT
VMASAMPFVGRG

Sequences:

>Translated_252_residues
MNTSRRIALVTGAGSGVGRLTALALLDDGWTVVLAGRRADPLQTLAAEAAARGQTALAVPTDVTDPASVQSLFDTIEREF
GRLDMLFNNAGVNAPAVPMDELPLDKWFNVINTNVTGVFLCARAAFGLMRRQSPQGGRIINNGSVSAHTPRPFTAPYTAS
KHAVTGLTKALALDGRAFNIAAGQIDIGNALTELSERMTRGVLQANGTTAPEPMMEARHVANAVRHMASLPLDANVLNMT
VMASAMPFVGRG
>Mature_252_residues
MNTSRRIALVTGAGSGVGRLTALALLDDGWTVVLAGRRADPLQTLAAEAAARGQTALAVPTDVTDPASVQSLFDTIEREF
GRLDMLFNNAGVNAPAVPMDELPLDKWFNVINTNVTGVFLCARAAFGLMRRQSPQGGRIINNGSVSAHTPRPFTAPYTAS
KHAVTGLTKALALDGRAFNIAAGQIDIGNALTELSERMTRGVLQANGTTAPEPMMEARHVANAVRHMASLPLDANVLNMT
VMASAMPFVGRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=233, Percent_Identity=30.9012875536481, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI31542939, Length=182, Percent_Identity=32.967032967033, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI209862901, Length=203, Percent_Identity=32.512315270936, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI19923983, Length=203, Percent_Identity=32.512315270936, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=33.1428571428571, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI7706318, Length=171, Percent_Identity=30.9941520467836, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI40254992, Length=167, Percent_Identity=30.5389221556886, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI59889578, Length=143, Percent_Identity=32.1678321678322, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4504505, Length=224, Percent_Identity=31.6964285714286, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI210032110, Length=176, Percent_Identity=28.9772727272727, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=30.8080808080808, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI7657478, Length=202, Percent_Identity=31.1881188118812, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI19923817, Length=174, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI142976729, Length=223, Percent_Identity=28.2511210762332, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI4758504, Length=177, Percent_Identity=31.638418079096, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI83715985, Length=177, Percent_Identity=31.638418079096, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI32483357, Length=169, Percent_Identity=28.4023668639053, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI40548397, Length=197, Percent_Identity=29.4416243654822, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI214010158, Length=197, Percent_Identity=29.4416243654822, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI214010156, Length=197, Percent_Identity=29.4416243654822, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI22758144, Length=197, Percent_Identity=29.4416243654822, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=27.0916334661355, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI22507405, Length=193, Percent_Identity=28.4974093264249, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI1788459, Length=171, Percent_Identity=38.0116959064327, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787335, Length=232, Percent_Identity=31.8965517241379, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1790717, Length=202, Percent_Identity=30.6930693069307, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI2367175, Length=194, Percent_Identity=34.020618556701, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789057, Length=188, Percent_Identity=31.9148936170213, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082100, Length=233, Percent_Identity=31.3304721030043, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787820, Length=247, Percent_Identity=27.1255060728745, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789208, Length=175, Percent_Identity=31.4285714285714, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786812, Length=175, Percent_Identity=33.1428571428571, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787526, Length=170, Percent_Identity=30, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1789378, Length=186, Percent_Identity=29.0322580645161, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082160, Length=190, Percent_Identity=27.8947368421053, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=212, Percent_Identity=27.8301886792453, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17507613, Length=212, Percent_Identity=27.8301886792453, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=222, Percent_Identity=27.9279279279279, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=171, Percent_Identity=30.4093567251462, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=230, Percent_Identity=27.8260869565217, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=172, Percent_Identity=29.6511627906977, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=25.5725190839695, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=229, Percent_Identity=28.3842794759825, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17557780, Length=202, Percent_Identity=28.7128712871287, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=198, Percent_Identity=32.3232323232323, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=200, Percent_Identity=33, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=205, Percent_Identity=28.780487804878, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193210355, Length=200, Percent_Identity=26.5, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=180, Percent_Identity=32.2222222222222, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=238, Percent_Identity=26.0504201680672, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71997099, Length=212, Percent_Identity=29.7169811320755, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=177, Percent_Identity=28.8135593220339, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=186, Percent_Identity=26.8817204301075, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=225, Percent_Identity=28.4444444444444, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=180, Percent_Identity=26.1111111111111, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17536651, Length=177, Percent_Identity=28.8135593220339, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=184, Percent_Identity=28.804347826087, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=244, Percent_Identity=28.6885245901639, Blast_Score=81, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=173, Percent_Identity=27.7456647398844, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322067, Length=239, Percent_Identity=25.9414225941423, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007236, Length=251, Percent_Identity=30.6772908366534, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI116007238, Length=179, Percent_Identity=32.4022346368715, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI28571387, Length=254, Percent_Identity=30.7086614173228, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281364494, Length=190, Percent_Identity=34.2105263157895, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI116007234, Length=250, Percent_Identity=28.4, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24644339, Length=203, Percent_Identity=30.0492610837438, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI17737361, Length=178, Percent_Identity=37.0786516853933, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24580925, Length=183, Percent_Identity=30.0546448087432, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641232, Length=173, Percent_Identity=37.5722543352601, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007232, Length=181, Percent_Identity=32.5966850828729, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI21355319, Length=173, Percent_Identity=31.7919075144509, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24641388, Length=249, Percent_Identity=29.3172690763052, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21357041, Length=197, Percent_Identity=30.4568527918782, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24648944, Length=237, Percent_Identity=28.6919831223629, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI23397609, Length=174, Percent_Identity=32.183908045977, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648693, Length=248, Percent_Identity=28.2258064516129, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355889, Length=248, Percent_Identity=28.2258064516129, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI18859837, Length=211, Percent_Identity=32.7014218009479, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24663911, Length=253, Percent_Identity=25.296442687747, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28571526, Length=197, Percent_Identity=29.4416243654822, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24584752, Length=223, Percent_Identity=29.5964125560538, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161076933, Length=175, Percent_Identity=29.7142857142857, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24584748, Length=175, Percent_Identity=29.7142857142857, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24639444, Length=176, Percent_Identity=30.1136363636364, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011294
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26533; Mature: 26533

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSRRIALVTGAGSGVGRLTALALLDDGWTVVLAGRRADPLQTLAAEAAARGQTALAVP
CCCCCEEEEEEECCCCHHHHEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCEEEECC
TDVTDPASVQSLFDTIEREFGRLDMLFNNAGVNAPAVPMDELPLDKWFNVINTNVTGVFL
CCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHCCHHHHHHHHCCCHHHHHH
CARAAFGLMRRQSPQGGRIINNGSVSAHTPRPFTAPYTASKHAVTGLTKALALDGRAFNI
HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
AAGQIDIGNALTELSERMTRGVLQANGTTAPEPMMEARHVANAVRHMASLPLDANVLNMT
EECCEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VMASAMPFVGRG
HHHHHCCCCCCC
>Mature Secondary Structure
MNTSRRIALVTGAGSGVGRLTALALLDDGWTVVLAGRRADPLQTLAAEAAARGQTALAVP
CCCCCEEEEEEECCCCHHHHEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCEEEECC
TDVTDPASVQSLFDTIEREFGRLDMLFNNAGVNAPAVPMDELPLDKWFNVINTNVTGVFL
CCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHCCHHHHHHHHCCCHHHHHH
CARAAFGLMRRQSPQGGRIINNGSVSAHTPRPFTAPYTASKHAVTGLTKALALDGRAFNI
HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
AAGQIDIGNALTELSERMTRGVLQANGTTAPEPMMEARHVANAVRHMASLPLDANVLNMT
EECCEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VMASAMPFVGRG
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]