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The map label for this gene is ecpD [H]

Identifier: 73541384

GI number: 73541384

Start: 1828490

End: 1829263

Strand: Direct

Name: ecpD [H]

Synonym: Reut_A1695

Alternate gene names: 73541384

Gene position: 1828490-1829263 (Clockwise)

Preceding gene: 73541383

Following gene: 73541385

Centisome position: 48.04

GC content: 65.37

Gene sequence:

>774_bases
ATGCCAAGCCACCTTTTCAACTCACGGCGGCCTTTCATGGCCGTGCTGCTGGCCGCGCTGGTCGCCGTCGGCGTGAGCCC
AGTCACCCCTGCGTTCGGCTCGGTGGTCATCGCCGGCACGCGCGCCGTCTACAACGCCCGTGATCGCGAAGTCACGATCA
AGCTGACCAACGAAGGCAACGCGCCGGCGCTGGTGCAGTCATGGTTCGACAAGGGCGATCCCGCAGCGCCGCCGGCAAGC
ATCGGCGTGCCGTTCGTGCTGACGCCACCGGTCGCGCGTATCGATCCAGGAAAGGGTCAGAGCCTGCGCATCGTCTACAC
CGGCGAACCGCTACCCGAGGATCGCGAATCGGTCTTCTGGCTCAATGTGCTGGAGATACCGCCCAAGCCCAACGCGGAAC
AGACTGGTCCTAACAAGCTGCAACTCGCATTCCGCTCGCGCATCAAGTTTTTTTACCGTCCCGAAGGGCTCAAGGGTACG
CCGGGCGAGGCGCCGGCGAAACTTGTCTGGCGACTCGCACGAACCGATGGCCGGCTGCTGATCGAATGCCACAACCCTAC
GGCGTTCCACGTTTCGGTCGTCAGCGTCGAGCTGTCGTCCGGCGGCAAGCGTGCCGTCAACGAGCGCGGCGCCATGGTGG
CGCCCGGCGAAACGCGCCAGTTCCCGCTCATCGGCGACGTCCCGTCCGTCCCCGGCACCAAGGTCCGCTACCACACGCTC
AATGACTGGGGCAGTTCGAACGATGGCGAAGCGCCACTGGACGACGCCAGGTAG

Upstream 100 bases:

>100_bases
TCGTCGAGCGTCACCTACATCCTGTCGTATCAGTAAGGCCACGGGGCCGGAACAGGGGCAGCTATTGGCGGCCCTGTATT
CCGGCTCTGCCGAAGTACCC

Downstream 100 bases:

>100_bases
CCGTGCTGGTCCGCAGGTGCCGCGACGGCCGCGCGCCGAACCGACCGGCTCCAGGAAATCTCAATGCAAGTCAGAAGAAG
GCAGCGCCTGTTTCCTTCCC

Product: twin-arginine translocation pathway signal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MPSHLFNSRRPFMAVLLAALVAVGVSPVTPAFGSVVIAGTRAVYNARDREVTIKLTNEGNAPALVQSWFDKGDPAAPPAS
IGVPFVLTPPVARIDPGKGQSLRIVYTGEPLPEDRESVFWLNVLEIPPKPNAEQTGPNKLQLAFRSRIKFFYRPEGLKGT
PGEAPAKLVWRLARTDGRLLIECHNPTAFHVSVVSVELSSGGKRAVNERGAMVAPGETRQFPLIGDVPSVPGTKVRYHTL
NDWGSSNDGEAPLDDAR

Sequences:

>Translated_257_residues
MPSHLFNSRRPFMAVLLAALVAVGVSPVTPAFGSVVIAGTRAVYNARDREVTIKLTNEGNAPALVQSWFDKGDPAAPPAS
IGVPFVLTPPVARIDPGKGQSLRIVYTGEPLPEDRESVFWLNVLEIPPKPNAEQTGPNKLQLAFRSRIKFFYRPEGLKGT
PGEAPAKLVWRLARTDGRLLIECHNPTAFHVSVVSVELSSGGKRAVNERGAMVAPGETRQFPLIGDVPSVPGTKVRYHTL
NDWGSSNDGEAPLDDAR
>Mature_256_residues
PSHLFNSRRPFMAVLLAALVAVGVSPVTPAFGSVVIAGTRAVYNARDREVTIKLTNEGNAPALVQSWFDKGDPAAPPASI
GVPFVLTPPVARIDPGKGQSLRIVYTGEPLPEDRESVFWLNVLEIPPKPNAEQTGPNKLQLAFRSRIKFFYRPEGLKGTP
GEAPAKLVWRLARTDGRLLIECHNPTAFHVSVVSVELSSGGKRAVNERGAMVAPGETRQFPLIGDVPSVPGTKVRYHTLN
DWGSSNDGEAPLDDAR

Specific function: Probably mediates assembly of a pilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=252, Percent_Identity=42.8571428571429, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1788428, Length=214, Percent_Identity=40.6542056074766, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1789532, Length=244, Percent_Identity=35.2459016393443, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1786743, Length=234, Percent_Identity=34.1880341880342, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790771, Length=240, Percent_Identity=34.1666666666667, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1787171, Length=235, Percent_Identity=30.6382978723404, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788677, Length=213, Percent_Identity=32.3943661971831, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786936, Length=218, Percent_Identity=29.3577981651376, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082203, Length=186, Percent_Identity=29.5698924731183, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081806, Length=235, Percent_Identity=28.936170212766, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27746; Mature: 27615

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSHLFNSRRPFMAVLLAALVAVGVSPVTPAFGSVVIAGTRAVYNARDREVTIKLTNEGN
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHEECCCCCEEEEEEECCCC
APALVQSWFDKGDPAAPPASIGVPFVLTPPVARIDPGKGQSLRIVYTGEPLPEDRESVFW
CCHHHHHHHCCCCCCCCCHHCCCCEEECCCCCEECCCCCCEEEEEECCCCCCCCCCCEEE
LNVLEIPPKPNAEQTGPNKLQLAFRSRIKFFYRPEGLKGTPGEAPAKLVWRLARTDGRLL
EEEEECCCCCCCCCCCCHHEEHEEHHHEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEE
IECHNPTAFHVSVVSVELSSGGKRAVNERGAMVAPGETRQFPLIGDVPSVPGTKVRYHTL
EEECCCCEEEEEEEEEEECCCCCCHHHCCCCEECCCCCCCCCEECCCCCCCCCEEEEEEE
NDWGSSNDGEAPLDDAR
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PSHLFNSRRPFMAVLLAALVAVGVSPVTPAFGSVVIAGTRAVYNARDREVTIKLTNEGN
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHEECCCCCEEEEEEECCCC
APALVQSWFDKGDPAAPPASIGVPFVLTPPVARIDPGKGQSLRIVYTGEPLPEDRESVFW
CCHHHHHHHCCCCCCCCCHHCCCCEEECCCCCEECCCCCCEEEEEECCCCCCCCCCCEEE
LNVLEIPPKPNAEQTGPNKLQLAFRSRIKFFYRPEGLKGTPGEAPAKLVWRLARTDGRLL
EEEEECCCCCCCCCCCCHHEEHEEHHHEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEE
IECHNPTAFHVSVVSVELSSGGKRAVNERGAMVAPGETRQFPLIGDVPSVPGTKVRYHTL
EEECCCCEEEEEEEEEEECCCCCCHHHCCCCEECCCCCCCCCEECCCCCCCCCEEEEEEE
NDWGSSNDGEAPLDDAR
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]