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The map label for this gene is yfdE [H]

Identifier: 73541363

GI number: 73541363

Start: 1805390

End: 1806610

Strand: Direct

Name: yfdE [H]

Synonym: Reut_A1673

Alternate gene names: 73541363

Gene position: 1805390-1806610 (Clockwise)

Preceding gene: 73541360

Following gene: 73541364

Centisome position: 47.43

GC content: 65.85

Gene sequence:

>1221_bases
ATGAAGAAAGCCCTCGGACACCTCAGGGTGCTGGACCTCACACGCGTGCTGGCCGGCCCCTGGGCGACGCAGAACCTTGC
CGATATGGGCGCGGACGTGATCAAGATCGAACGGCCTGGCGCGGGCGACGACACGCGCGCCTGGGGCCCGCCCTTCCTGC
GCGATGCACAAGGCGAGGAGACGCGCGATTCGTCCTACTTCCTGAGTGCCAACCGCGGCAAGCGCTCGGTGACGGTGGAT
ATCGCCACGCCCGCGGGCCAGGTCATCATCCGCGACCTCGCGCGTGAGGCCGACGTGGTGGTCGAAAACTACAAGGTCGG
CACGCTGGCGCGCTACGGGCTGGGCTACGAAGACCTGCGCGCCATCAACCCGCGGCTCGTGTATTGCTCGATCACCGGCT
TCGGCCAGAGCGGCCCGTACGCATCGCTGCCCGGCTATGACTTCGTGTTCCAGGGCATGGGCGGGCTGATGAGCATCACC
GGCATGCCCGACGGCGAGCCCGGAGGCGGGCCGGTCAAGTCCGGCATCGCCATTACCGACCTGCTGACCGGCATGTACGC
GACCACGGCCATTCTCGCCGCGCTGGAACACCGGCACGTGAGCGGCGTTGGCCAGTACATCGACATGGCGCTGCTCGACT
GCGTGGTGACGATCAACTCGTACCAGGCGATCAACTACTTCCTGTCGGGAAAGATTCCGCAGCGCATGGGCAATGCGCAT
TCGAACATGGTCCCGTACCAGGTGTTCCGCTGCAAGGAGGGCGACGTCATCGTCGCGGTCGGCAACGACGGCCAGTATCG
CGCACTGTGCAAGGTGATCGGGCGGCACGACCTGGGCGAAGACGAACGCTTCGCGACTGCCGGGAACCGCAACCGCAACC
GAGAGGTGCTGATCCCGCAAGTCGCCGAAGCCATGCTGGCGCGCACCATGACGGAATGGGTCGAGCTGCTCGAAGCGGCT
AACGTGCCTTGCGGCCCGATCTACAACATGCAGCAGGTATTCGAAGATCCGCAGGTACGCCATCGCGAGATGCAGCTGTC
GCTGCCGCACAGCGCTGGCGTGAGTGCACCAGGCCTGGCCAACCCGATCCGGTTGTCCGACACGCCGGTCACATACGAGC
GCTCCGCGCCGACGCTGGGCGAGCATACCGACGCTGTACTCGGCGAACTCGGCTACGACGCCGCGCGTATTGCCGCGTTG
CGCAAGGAGGGTGTGCTATAG

Upstream 100 bases:

>100_bases
CTCGCGCACTCCTAAGCTGAGTTCCGCTGCTTCTCCGTGGTCCGTGCTCCGTCATTCGGACCGGTGGCGGCAGAACAGGC
CCAGAACAGCAAGGAGACCC

Downstream 100 bases:

>100_bases
GCCACATCGACGGCATCGCTGCATGAACACATACCAACCAGAGGAGACAGCAGTGAAGACCCGATTCCCGTTGCGCCTGG
CCGTCGCGATGACCGCGGCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MKKALGHLRVLDLTRVLAGPWATQNLADMGADVIKIERPGAGDDTRAWGPPFLRDAQGEETRDSSYFLSANRGKRSVTVD
IATPAGQVIIRDLAREADVVVENYKVGTLARYGLGYEDLRAINPRLVYCSITGFGQSGPYASLPGYDFVFQGMGGLMSIT
GMPDGEPGGGPVKSGIAITDLLTGMYATTAILAALEHRHVSGVGQYIDMALLDCVVTINSYQAINYFLSGKIPQRMGNAH
SNMVPYQVFRCKEGDVIVAVGNDGQYRALCKVIGRHDLGEDERFATAGNRNRNREVLIPQVAEAMLARTMTEWVELLEAA
NVPCGPIYNMQQVFEDPQVRHREMQLSLPHSAGVSAPGLANPIRLSDTPVTYERSAPTLGEHTDAVLGELGYDAARIAAL
RKEGVL

Sequences:

>Translated_406_residues
MKKALGHLRVLDLTRVLAGPWATQNLADMGADVIKIERPGAGDDTRAWGPPFLRDAQGEETRDSSYFLSANRGKRSVTVD
IATPAGQVIIRDLAREADVVVENYKVGTLARYGLGYEDLRAINPRLVYCSITGFGQSGPYASLPGYDFVFQGMGGLMSIT
GMPDGEPGGGPVKSGIAITDLLTGMYATTAILAALEHRHVSGVGQYIDMALLDCVVTINSYQAINYFLSGKIPQRMGNAH
SNMVPYQVFRCKEGDVIVAVGNDGQYRALCKVIGRHDLGEDERFATAGNRNRNREVLIPQVAEAMLARTMTEWVELLEAA
NVPCGPIYNMQQVFEDPQVRHREMQLSLPHSAGVSAPGLANPIRLSDTPVTYERSAPTLGEHTDAVLGELGYDAARIAAL
RKEGVL
>Mature_406_residues
MKKALGHLRVLDLTRVLAGPWATQNLADMGADVIKIERPGAGDDTRAWGPPFLRDAQGEETRDSSYFLSANRGKRSVTVD
IATPAGQVIIRDLAREADVVVENYKVGTLARYGLGYEDLRAINPRLVYCSITGFGQSGPYASLPGYDFVFQGMGGLMSIT
GMPDGEPGGGPVKSGIAITDLLTGMYATTAILAALEHRHVSGVGQYIDMALLDCVVTINSYQAINYFLSGKIPQRMGNAH
SNMVPYQVFRCKEGDVIVAVGNDGQYRALCKVIGRHDLGEDERFATAGNRNRNREVLIPQVAEAMLARTMTEWVELLEAA
NVPCGPIYNMQQVFEDPQVRHREMQLSLPHSAGVSAPGLANPIRLSDTPVTYERSAPTLGEHTDAVLGELGYDAARIAAL
RKEGVL

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=407, Percent_Identity=44.4717444717445, Blast_Score=340, Evalue=2e-93,
Organism=Homo sapiens, GI300863124, Length=433, Percent_Identity=41.8013856812933, Blast_Score=326, Evalue=3e-89,
Organism=Homo sapiens, GI300863126, Length=407, Percent_Identity=39.5577395577396, Blast_Score=280, Evalue=2e-75,
Organism=Homo sapiens, GI13376042, Length=433, Percent_Identity=37.1824480369515, Blast_Score=272, Evalue=4e-73,
Organism=Homo sapiens, GI42794625, Length=406, Percent_Identity=25.3694581280788, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI266456254, Length=406, Percent_Identity=25.1231527093596, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI266458393, Length=274, Percent_Identity=28.8321167883212, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI266458397, Length=268, Percent_Identity=28.3582089552239, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI266458395, Length=152, Percent_Identity=32.8947368421053, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI42822893, Length=152, Percent_Identity=32.8947368421053, Blast_Score=93, Evalue=4e-19,
Organism=Escherichia coli, GI87082093, Length=384, Percent_Identity=34.8958333333333, Blast_Score=245, Evalue=3e-66,
Organism=Escherichia coli, GI1788717, Length=425, Percent_Identity=33.1764705882353, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1786222, Length=412, Percent_Identity=26.6990291262136, Blast_Score=105, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI115535051, Length=337, Percent_Identity=23.4421364985163, Blast_Score=85, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=337, Percent_Identity=22.5519287833828, Blast_Score=78, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24648431, Length=406, Percent_Identity=42.3645320197044, Blast_Score=323, Evalue=2e-88,
Organism=Drosophila melanogaster, GI24585488, Length=335, Percent_Identity=26.2686567164179, Blast_Score=109, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43979; Mature: 43979

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKALGHLRVLDLTRVLAGPWATQNLADMGADVIKIERPGAGDDTRAWGPPFLRDAQGEE
CCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
TRDSSYFLSANRGKRSVTVDIATPAGQVIIRDLAREADVVVENYKVGTLARYGLGYEDLR
CCCCCEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHEEECCCCCHHHHHCCCHHHHH
AINPRLVYCSITGFGQSGPYASLPGYDFVFQGMGGLMSITGMPDGEPGGGPVKSGIAITD
HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHH
LLTGMYATTAILAALEHRHVSGVGQYIDMALLDCVVTINSYQAINYFLSGKIPQRMGNAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHCCCCHHHHCCCC
SNMVPYQVFRCKEGDVIVAVGNDGQYRALCKVIGRHDLGEDERFATAGNRNRNREVLIPQ
CCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCEEECHH
VAEAMLARTMTEWVELLEAANVPCGPIYNMQQVFEDPQVRHREMQLSLPHSAGVSAPGLA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHEEECCCCCCCCCCCCC
NPIRLSDTPVTYERSAPTLGEHTDAVLGELGYDAARIAALRKEGVL
CCEEECCCCCEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKKALGHLRVLDLTRVLAGPWATQNLADMGADVIKIERPGAGDDTRAWGPPFLRDAQGEE
CCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
TRDSSYFLSANRGKRSVTVDIATPAGQVIIRDLAREADVVVENYKVGTLARYGLGYEDLR
CCCCCEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHEEECCCCCHHHHHCCCHHHHH
AINPRLVYCSITGFGQSGPYASLPGYDFVFQGMGGLMSITGMPDGEPGGGPVKSGIAITD
HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHH
LLTGMYATTAILAALEHRHVSGVGQYIDMALLDCVVTINSYQAINYFLSGKIPQRMGNAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHCCCCHHHHCCCC
SNMVPYQVFRCKEGDVIVAVGNDGQYRALCKVIGRHDLGEDERFATAGNRNRNREVLIPQ
CCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCEEECHH
VAEAMLARTMTEWVELLEAANVPCGPIYNMQQVFEDPQVRHREMQLSLPHSAGVSAPGLA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHEEECCCCCCCCCCCCC
NPIRLSDTPVTYERSAPTLGEHTDAVLGELGYDAARIAALRKEGVL
CCEEECCCCCEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]