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The map label for this gene is yagI [H]

Identifier: 73541003

GI number: 73541003

Start: 1404643

End: 1405431

Strand: Reverse

Name: yagI [H]

Synonym: Reut_A1309

Alternate gene names: 73541003

Gene position: 1405431-1404643 (Counterclockwise)

Preceding gene: 73541007

Following gene: 73541002

Centisome position: 36.92

GC content: 66.67

Gene sequence:

>789_bases
ATGTCAGACGCAGACAAGTCGCCTGGAAAGACCTCGATCCAGGTTATTGAACGCATGATGACGCTGCTGGACGCCCTGGC
CCAGCACGCCGACCCGGTCAGCCTCAAAGAGCTGTCGATCGCTACCGGACTGCATCCCTCCACGGCCCACCGCATCCTCA
ACGATATGGTGGCGTGCCGCTTCGTCGACCGCTCCGATCCGGGCAGCTATCGGTTGGGCATGCGGCTGCTCGAACTCGGC
AACCTGGTCAAGGCACGGCTTTCGGTACGCGACGCGGCGCTGGCGCCGATGCGCGCGCTGCACCGCGTGACCGGGCAGAC
AGTCAACCTGTCGGTGCGCCAGGGCGACGAGATCGTGTACATCGAGCGCGCCTACAGCGAGCGCTCCGGCATGCAGGTGG
TGCGCGCCATCGGCGGCCGTGCGCCGCTGCACCTGACCTCAGTCGGCAAGCTGTTCCTGGCCGCCGACGAGTCCACGCGC
GTGCGCAGCTATGCCACGCGCACTGGCCTGGCCGGTCATACCCGCACCTCGATCACCGAGCTGACCAAGCTCGAACGCGA
ACTGAACTGGGTCCGCACCAACGGTTATGCGCGTGACAACGAAGAGCTGGAACTCGGCGTGCGCTGCATCGCGGCCGGCA
TCTACGACGATTCGCGCCGCCTGGTCGCCGGGCTGTCGCTTTCGGCGCCGGCCGACCGCCTGCAAGACAGCTGGCTCCAG
AACCTGAAGGACACCGCGCTGCAGATTTCGCGCGGCATGGGATACGTGACGGAGCCCGAAGCGGCCTGA

Upstream 100 bases:

>100_bases
TAGAGGATTCTTACTGAAATGTCATTTCACCCATTGAAATTTTCACGATGTGAGATAGAATCAGGCAAACGCTTAATTTG
CCGCATGGCAACATTTCTCT

Downstream 100 bases:

>100_bases
CGTGAGCCGTTCCGGCGGCAGCGGGAACACAGACTTGCTGCCGCCGGATACCCTGACGCAGTGATGATGGATTTAAGGGT
TTACTCGTAGTTTTCAGATA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSDADKSPGKTSIQVIERMMTLLDALAQHADPVSLKELSIATGLHPSTAHRILNDMVACRFVDRSDPGSYRLGMRLLELG
NLVKARLSVRDAALAPMRALHRVTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADESTR
VRSYATRTGLAGHTRTSITELTKLERELNWVRTNGYARDNEELELGVRCIAAGIYDDSRRLVAGLSLSAPADRLQDSWLQ
NLKDTALQISRGMGYVTEPEAA

Sequences:

>Translated_262_residues
MSDADKSPGKTSIQVIERMMTLLDALAQHADPVSLKELSIATGLHPSTAHRILNDMVACRFVDRSDPGSYRLGMRLLELG
NLVKARLSVRDAALAPMRALHRVTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADESTR
VRSYATRTGLAGHTRTSITELTKLERELNWVRTNGYARDNEELELGVRCIAAGIYDDSRRLVAGLSLSAPADRLQDSWLQ
NLKDTALQISRGMGYVTEPEAA
>Mature_261_residues
SDADKSPGKTSIQVIERMMTLLDALAQHADPVSLKELSIATGLHPSTAHRILNDMVACRFVDRSDPGSYRLGMRLLELGN
LVKARLSVRDAALAPMRALHRVTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADESTRV
RSYATRTGLAGHTRTSITELTKLERELNWVRTNGYARDNEELELGVRCIAAGIYDDSRRLVAGLSLSAPADRLQDSWLQN
LKDTALQISRGMGYVTEPEAA

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=253, Percent_Identity=34.3873517786561, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1789999, Length=250, Percent_Identity=32.8, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1788131, Length=263, Percent_Identity=32.319391634981, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1786715, Length=251, Percent_Identity=31.4741035856574, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87082359, Length=236, Percent_Identity=32.6271186440678, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790752, Length=219, Percent_Identity=29.6803652968037, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788581, Length=260, Percent_Identity=25.7692307692308, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28784; Mature: 28653

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDADKSPGKTSIQVIERMMTLLDALAQHADPVSLKELSIATGLHPSTAHRILNDMVACR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
FVDRSDPGSYRLGMRLLELGNLVKARLSVRDAALAPMRALHRVTGQTVNLSVRQGDEIVY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEE
IERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADESTRVRSYATRTGLAGHTRTSITE
EEECCCCHHHHHHHHHHCCCCCEEHHHHCEEEEECCCCHHHHHHHHHCCCCCCCHHHHHH
LTKLERELNWVRTNGYARDNEELELGVRCIAAGIYDDSRRLVAGLSLSAPADRLQDSWLQ
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHEECCCCCCCHHHHHHHHHH
NLKDTALQISRGMGYVTEPEAA
HHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SDADKSPGKTSIQVIERMMTLLDALAQHADPVSLKELSIATGLHPSTAHRILNDMVACR
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
FVDRSDPGSYRLGMRLLELGNLVKARLSVRDAALAPMRALHRVTGQTVNLSVRQGDEIVY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEE
IERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADESTRVRSYATRTGLAGHTRTSITE
EEECCCCHHHHHHHHHHCCCCCEEHHHHCEEEEECCCCHHHHHHHHHCCCCCCCHHHHHH
LTKLERELNWVRTNGYARDNEELELGVRCIAAGIYDDSRRLVAGLSLSAPADRLQDSWLQ
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHEECCCCCCCHHHHHHHHHH
NLKDTALQISRGMGYVTEPEAA
HHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]