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The map label for this gene is ygeR [H]

Identifier: 73540775

GI number: 73540775

Start: 1163498

End: 1164226

Strand: Direct

Name: ygeR [H]

Synonym: Reut_A1073

Alternate gene names: 73540775

Gene position: 1163498-1164226 (Clockwise)

Preceding gene: 73540767

Following gene: 73540778

Centisome position: 30.57

GC content: 70.64

Gene sequence:

>729_bases
ATGACGCCAACAAGACAAGACTCCGCAGACACCGCCGGCCGCCGCCGGATGCTGGGATGGATGCTAGCCGCGGCCTCCGC
GGCGCTGGCCGCCGGGTGCGGTACGATGTCCACCGAACCCGCGCCGGAAGGTTTTTACCGCGTGGAAAGCGGCGATACGC
TGTATTCGATCGCGCGCAAACACCGCCGCAACGTGCGCGACCTGGTGCGGTGGAACAACCTGCCGAGCGCAGACCGCATC
GAAGTGGGCCAACTCATCCGCGTCAAGCCGCCGGGTGCGGGCACGGCCACCGCATCAGCAGGCTCGTCGTCCCAGACGGT
GACGGATACGCCACGCGTGGATGCCGGCGGCGAGTCGAAGCCGCCCTCGAGCGCGCCCCGGCTGCAGTGGCCTGCCGATG
GCAAGGTCACCGCACGCTTCGCGCCGCCCGCGAGCAAGGGCCTGACCATCGCGGTGCCGCCGGGCGGCACGGTGAAAGCG
GCGGCAGCGGGGTGGGCGATCCATGTCGGCGACCTGCGCGGCTACGGCATGCTGGTGATCGTCAAGCACAGCGACGACTG
GCTGACGGTTTACGGCAACCTCGACAAGCCGCTGGTCAGCGAAGGCGCGCGCGTCGCCGCGGGCCAGGACGTTGGCCGCA
TGGGCAGCGCCGGCGCCGACCTGCATTTCGAGGTGCGCGGCAACGGCAAGCCGGTCGATCCGGCCAACTACCTGCCGGCG
CGCGGCTGA

Upstream 100 bases:

>100_bases
ATTTGGCGGGCTGTGTGGCGGGGGCAGCGATAATAGGGCCGTTACAGGCGCGCTGCACACACGCAAGTCGCCCCCCGGAA
GACCATATCAACAGGGACGA

Downstream 100 bases:

>100_bases
ACTGCCGTTACTGCGCGTGCTCGATCACGAGCTGCACGCGCGTGATGCCATTGAAGGTGTTGTTGTCGAGCCGGTAGGCG
ATCTGCGCGCTCGCGCCGAG

Product: peptidoglycan-binding LysM:peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTPTRQDSADTAGRRRMLGWMLAAASAALAAGCGTMSTEPAPEGFYRVESGDTLYSIARKHRRNVRDLVRWNNLPSADRI
EVGQLIRVKPPGAGTATASAGSSSQTVTDTPRVDAGGESKPPSSAPRLQWPADGKVTARFAPPASKGLTIAVPPGGTVKA
AAAGWAIHVGDLRGYGMLVIVKHSDDWLTVYGNLDKPLVSEGARVAAGQDVGRMGSAGADLHFEVRGNGKPVDPANYLPA
RG

Sequences:

>Translated_242_residues
MTPTRQDSADTAGRRRMLGWMLAAASAALAAGCGTMSTEPAPEGFYRVESGDTLYSIARKHRRNVRDLVRWNNLPSADRI
EVGQLIRVKPPGAGTATASAGSSSQTVTDTPRVDAGGESKPPSSAPRLQWPADGKVTARFAPPASKGLTIAVPPGGTVKA
AAAGWAIHVGDLRGYGMLVIVKHSDDWLTVYGNLDKPLVSEGARVAAGQDVGRMGSAGADLHFEVRGNGKPVDPANYLPA
RG
>Mature_241_residues
TPTRQDSADTAGRRRMLGWMLAAASAALAAGCGTMSTEPAPEGFYRVESGDTLYSIARKHRRNVRDLVRWNNLPSADRIE
VGQLIRVKPPGAGTATASAGSSSQTVTDTPRVDAGGESKPPSSAPRLQWPADGKVTARFAPPASKGLTIAVPPGGTVKAA
AAGWAIHVGDLRGYGMLVIVKHSDDWLTVYGNLDKPLVSEGARVAAGQDVGRMGSAGADLHFEVRGNGKPVDPANYLPAR
G

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=245, Percent_Identity=36.3265306122449, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1789099, Length=257, Percent_Identity=31.5175097276265, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082297, Length=125, Percent_Identity=36.8, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 25236; Mature: 25104

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPTRQDSADTAGRRRMLGWMLAAASAALAAGCGTMSTEPAPEGFYRVESGDTLYSIARK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHH
HRRNVRDLVRWNNLPSADRIEVGQLIRVKPPGAGTATASAGSSSQTVTDTPRVDAGGESK
HHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
PPSSAPRLQWPADGKVTARFAPPASKGLTIAVPPGGTVKAAAAGWAIHVGDLRGYGMLVI
CCCCCCCEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEECCCEEEEECCCCCCEEEEE
VKHSDDWLTVYGNLDKPLVSEGARVAAGQDVGRMGSAGADLHFEVRGNGKPVDPANYLPA
EEECCCEEEEEECCCCHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
RG
CC
>Mature Secondary Structure 
TPTRQDSADTAGRRRMLGWMLAAASAALAAGCGTMSTEPAPEGFYRVESGDTLYSIARK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHH
HRRNVRDLVRWNNLPSADRIEVGQLIRVKPPGAGTATASAGSSSQTVTDTPRVDAGGESK
HHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
PPSSAPRLQWPADGKVTARFAPPASKGLTIAVPPGGTVKAAAAGWAIHVGDLRGYGMLVI
CCCCCCCEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEECCCEEEEECCCCCCEEEEE
VKHSDDWLTVYGNLDKPLVSEGARVAAGQDVGRMGSAGADLHFEVRGNGKPVDPANYLPA
EEECCCEEEEEECCCCHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
RG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]