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The map label for this gene is ycdC [C]

Identifier: 73540751

GI number: 73540751

Start: 1140351

End: 1140983

Strand: Direct

Name: ycdC [C]

Synonym: Reut_A1048

Alternate gene names: 73540751

Gene position: 1140351-1140983 (Clockwise)

Preceding gene: 73540748

Following gene: 73540754

Centisome position: 29.96

GC content: 62.88

Gene sequence:

>633_bases
ATGTCAAACGAGACCAGAACCAAGCGGGACCCAGAGGGCACGCGCCGCCGCATCCTGGCGGCGGCCACGGAGGAATTTGC
CAAGGGCGGCCTGGCCGGCGCCCGAGTCGACCAGATTGCGCGCCGTGCCGAGACCAACGAGCGCATGCTGTACTACTACT
ACGGCAGCAAGGAAGGGCTGTTCCTGGCCGTGCTTGAGAAGCAGTACGCCGAGTTCCGCGCCGATGAGGAACGGCTCCAT
ATCACCGACGAAGACCCCGTCGCCGCGGTCCGCACGCTGGCCCGCTTCGTCTGGGACTGGTATTACCAGCACCCGGAGTT
CATTCGGCTCGTCAACAGCGAGAATCTGCACGAGGCGCGCCACCTGAAGAAATCGGCGCACTTGCACCAGCTAGTCAATC
CGATCGTCAACGTGCTGGCGGACATCATCCGTCGCGGCCAGCAGCACGGGCTGTTCCGAGACAACATCGACGTTCCGCAG
TTCTACCTGACCATTTCGGCGCTGGGCTATTACGTGCTGTCCAACCGCTACACCATCAGTGCAGTGATTGGCAGGGACGT
GGCTTCGCAGGACGAGCACGAACGCTTCGCCGAACTGCACACCGACATGCTCCTGAGCTACCTGCGGCGCTGA

Upstream 100 bases:

>100_bases
ATTTCACGATCGGACAGAACCGGCCATCATGCGCGACGGCCAGCGGGCCAGAAGCGTGCGCGGGTGTGCCATAATCCGCG
CAAACATCGACCCTTATCCC

Downstream 100 bases:

>100_bases
CCGGCGCGTTGCATCCACGGCGCAGAAAAAAACGCCCGCGGTTGCGGGCGTTCTTGCATGGCGGACGGTCAGGTCACCGG
TACTTGCGGATGAAATCGCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSNETRTKRDPEGTRRRILAAATEEFAKGGLAGARVDQIARRAETNERMLYYYYGSKEGLFLAVLEKQYAEFRADEERLH
ITDEDPVAAVRTLARFVWDWYYQHPEFIRLVNSENLHEARHLKKSAHLHQLVNPIVNVLADIIRRGQQHGLFRDNIDVPQ
FYLTISALGYYVLSNRYTISAVIGRDVASQDEHERFAELHTDMLLSYLRR

Sequences:

>Translated_210_residues
MSNETRTKRDPEGTRRRILAAATEEFAKGGLAGARVDQIARRAETNERMLYYYYGSKEGLFLAVLEKQYAEFRADEERLH
ITDEDPVAAVRTLARFVWDWYYQHPEFIRLVNSENLHEARHLKKSAHLHQLVNPIVNVLADIIRRGQQHGLFRDNIDVPQ
FYLTISALGYYVLSNRYTISAVIGRDVASQDEHERFAELHTDMLLSYLRR
>Mature_209_residues
SNETRTKRDPEGTRRRILAAATEEFAKGGLAGARVDQIARRAETNERMLYYYYGSKEGLFLAVLEKQYAEFRADEERLHI
TDEDPVAAVRTLARFVWDWYYQHPEFIRLVNSENLHEARHLKKSAHLHQLVNPIVNVLADIIRRGQQHGLFRDNIDVPQF
YLTISALGYYVLSNRYTISAVIGRDVASQDEHERFAELHTDMLLSYLRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24525; Mature: 24394

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNETRTKRDPEGTRRRILAAATEEFAKGGLAGARVDQIARRAETNERMLYYYYGSKEGL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCE
FLAVLEKQYAEFRADEERLHITDEDPVAAVRTLARFVWDWYYQHPEFIRLVNSENLHEAR
EHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHH
HLKKSAHLHQLVNPIVNVLADIIRRGQQHGLFRDNIDVPQFYLTISALGYYVLSNRYTIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
AVIGRDVASQDEHERFAELHTDMLLSYLRR
HHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNETRTKRDPEGTRRRILAAATEEFAKGGLAGARVDQIARRAETNERMLYYYYGSKEGL
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCE
FLAVLEKQYAEFRADEERLHITDEDPVAAVRTLARFVWDWYYQHPEFIRLVNSENLHEAR
EHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHH
HLKKSAHLHQLVNPIVNVLADIIRRGQQHGLFRDNIDVPQFYLTISALGYYVLSNRYTIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
AVIGRDVASQDEHERFAELHTDMLLSYLRR
HHHHCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA