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The map label for this gene is rnfB [H]

Identifier: 73540750

GI number: 73540750

Start: 1139398

End: 1140144

Strand: Reverse

Name: rnfB [H]

Synonym: Reut_A1047

Alternate gene names: 73540750

Gene position: 1140144-1139398 (Counterclockwise)

Preceding gene: 73540752

Following gene: 73540749

Centisome position: 29.95

GC content: 70.28

Gene sequence:

>747_bases
GTGAGTTCCACCCAAACCCTCGCAGACCGCCTGGAGGCGCTGCTGCCGCAAACCCAGTGCACCAAGTGCGGCTTCAACGG
CTGCCGTCCGTACGCCGAAGCCATGGCCAGCGGCGAAGCCGCGTCCAACCGCTGCCCGCCCGGCGGCGCGGAGGGAATCC
GTCGCCTGTCCGCGGTGCTGGGCACCGGAGCGCTGCCGCTCGACCCCGAACGCGGCGTCGAGCAGCCGCGCGCCGTTGCG
CGCATCGACGAAAGCCTGTGCATCGGCTGCACGCTGTGCATCCAGGCCTGCCCGGTTGACGCCATCGCCGGCGCAGCCAA
GCAGATGCACACGATCATTCCAGAGCTGTGCACCGGCTGCGACCTCTGCGTGCCGCCCTGCCCCGTCGACTGCATCGACA
TGGTGCCCGTCACCGGCGAGCGCACGGGCTGGGACGCCTGGACGCAGGAACAGGCCGACGCCGCGCACGCCCGCTATGTC
GCGCGCAAACAGCGGCTGGTGCGCGAGCGCGAGGAGAACGATGCCCGCCTAGCAGCCAAGGCCGCCGCCAAGCTGGAAGC
GCTGCAGGCGGAAGCCGCCCAATCCGAAACCGAACGCGCCGCGCAGGAACGCAAGCGCGCCATCATTCAGGCCGCCATCG
AACGCGCGCGGCAGAAGCAACAGGCCGCGCGCAGCAGCACCGCCACGCCAGACAACGGCAGTGCGGGCGACGACAACAAC
GACAAACCGACGCCACCAGAACGATGA

Upstream 100 bases:

>100_bases
TAATCCGTGCGGCGCATGGCCCGCAGAGGCCGGCCCGCGATGTTGCCGGCAGCCTGCCGCCATCACGAATACTCCTGTTC
CCGCTATTCCTGCTGTTGTC

Downstream 100 bases:

>100_bases
ATGTAGCCAAGGTTCATGCGCTGTTCGAGACCCTGCGCGAGGTCAATCCCGCGCCGGCCACCGAACTGGAATACAGCTCG
CCGTTTGAACTGCTGATCGC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSSTQTLADRLEALLPQTQCTKCGFNGCRPYAEAMASGEAASNRCPPGGAEGIRRLSAVLGTGALPLDPERGVEQPRAVA
RIDESLCIGCTLCIQACPVDAIAGAAKQMHTIIPELCTGCDLCVPPCPVDCIDMVPVTGERTGWDAWTQEQADAAHARYV
ARKQRLVREREENDARLAAKAAAKLEALQAEAAQSETERAAQERKRAIIQAAIERARQKQQAARSSTATPDNGSAGDDNN
DKPTPPER

Sequences:

>Translated_248_residues
MSSTQTLADRLEALLPQTQCTKCGFNGCRPYAEAMASGEAASNRCPPGGAEGIRRLSAVLGTGALPLDPERGVEQPRAVA
RIDESLCIGCTLCIQACPVDAIAGAAKQMHTIIPELCTGCDLCVPPCPVDCIDMVPVTGERTGWDAWTQEQADAAHARYV
ARKQRLVREREENDARLAAKAAAKLEALQAEAAQSETERAAQERKRAIIQAAIERARQKQQAARSSTATPDNGSAGDDNN
DKPTPPER
>Mature_247_residues
SSTQTLADRLEALLPQTQCTKCGFNGCRPYAEAMASGEAASNRCPPGGAEGIRRLSAVLGTGALPLDPERGVEQPRAVAR
IDESLCIGCTLCIQACPVDAIAGAAKQMHTIIPELCTGCDLCVPPCPVDCIDMVPVTGERTGWDAWTQEQADAAHARYVA
RKQRLVREREENDARLAAKAAAKLEALQAEAAQSETERAAQERKRAIIQAAIERARQKQQAARSSTATPDNGSAGDDNND
KPTPPER

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=142, Percent_Identity=49.2957746478873, Blast_Score=143, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 26448; Mature: 26317

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTQTLADRLEALLPQTQCTKCGFNGCRPYAEAMASGEAASNRCPPGGAEGIRRLSAVL
CCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
GTGALPLDPERGVEQPRAVARIDESLCIGCTLCIQACPVDAIAGAAKQMHTIIPELCTGC
HCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
DLCVPPCPVDCIDMVPVTGERTGWDAWTQEQADAAHARYVARKQRLVREREENDARLAAK
CCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAKLEALQAEAAQSETERAAQERKRAIIQAAIERARQKQQAARSSTATPDNGSAGDDNN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
DKPTPPER
CCCCCCCC
>Mature Secondary Structure 
SSTQTLADRLEALLPQTQCTKCGFNGCRPYAEAMASGEAASNRCPPGGAEGIRRLSAVL
CCHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
GTGALPLDPERGVEQPRAVARIDESLCIGCTLCIQACPVDAIAGAAKQMHTIIPELCTGC
HCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
DLCVPPCPVDCIDMVPVTGERTGWDAWTQEQADAAHARYVARKQRLVREREENDARLAAK
CCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAKLEALQAEAAQSETERAAQERKRAIIQAAIERARQKQQAARSSTATPDNGSAGDDNN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
DKPTPPER
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA