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The map label for this gene is ygaU [H]

Identifier: 73540655

GI number: 73540655

Start: 1038982

End: 1039485

Strand: Direct

Name: ygaU [H]

Synonym: Reut_A0952

Alternate gene names: 73540655

Gene position: 1038982-1039485 (Clockwise)

Preceding gene: 73540654

Following gene: 73540656

Centisome position: 27.29

GC content: 63.49

Gene sequence:

>504_bases
ATGGGCATGTTCGACTTCATCAAGGAAGCGGGGGAAAAGCTGTTCGGCACCGGCGAGGCCAAGGCCGCGCAAGAGGCCGC
CGCGGCCGATGCATCGACGGAAAAGGTCGATGCAGCAAACCGCGCGGCTGGCGACGCCATCGAGGCGTACGTCAAGAAGA
TGGGTCTCGATGCCACCGGGTTGATGGTGCAAGTGGACGGCTCGCAGGGCCTGGTGACCGTGTTCGGCGTGGCGCCGGAC
CAGGCCACGCGGGAAAAGATCATCCTGTGCTGCGGCAACGTCGAAGGCGTCGACAAGGTCGAGGACAAGATGTCGGTCAA
CGTGGAATCGACCGAGTCGCAGTGGCACACGGTGGTCAAGGGCGACACCCTGTGGGCCATCTCGCAAGCGGCCTACGGCA
ACGGCGCCGAATACAACCGCATCTTCGAAGCCAACACGCCGATGCTGTCCCATCCGGACAAGATCTATCCGGGCCAGAAG
CTGCGGATTCCGCCGAAGGGCTGA

Upstream 100 bases:

>100_bases
GCGCCCTTCGTGCTTTTCGCCGGCTGTTCCGGATCCGGATTGCCACGGTCGCAACCGTGGCATGCATTCTGTCTTTTTCA
CTCACCGTCAGGAGGATGTC

Downstream 100 bases:

>100_bases
GATCGCTGCTGCGTCCGGGAAATGCCCATCTTGCACGGGGGCGGCAACTCCGCTATAGTCCCTGCCATGATTTCGCGCCA
AGCCCTACTCGCCCACACCA

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MGMFDFIKEAGEKLFGTGEAKAAQEAAAADASTEKVDAANRAAGDAIEAYVKKMGLDATGLMVQVDGSQGLVTVFGVAPD
QATREKIILCCGNVEGVDKVEDKMSVNVESTESQWHTVVKGDTLWAISQAAYGNGAEYNRIFEANTPMLSHPDKIYPGQK
LRIPPKG

Sequences:

>Translated_167_residues
MGMFDFIKEAGEKLFGTGEAKAAQEAAAADASTEKVDAANRAAGDAIEAYVKKMGLDATGLMVQVDGSQGLVTVFGVAPD
QATREKIILCCGNVEGVDKVEDKMSVNVESTESQWHTVVKGDTLWAISQAAYGNGAEYNRIFEANTPMLSHPDKIYPGQK
LRIPPKG
>Mature_166_residues
GMFDFIKEAGEKLFGTGEAKAAQEAAAADASTEKVDAANRAAGDAIEAYVKKMGLDATGLMVQVDGSQGLVTVFGVAPDQ
ATREKIILCCGNVEGVDKVEDKMSVNVESTESQWHTVVKGDTLWAISQAAYGNGAEYNRIFEANTPMLSHPDKIYPGQKL
RIPPKG

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=165, Percent_Identity=42.4242424242424, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 17769; Mature: 17638

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMFDFIKEAGEKLFGTGEAKAAQEAAAADASTEKVDAANRAAGDAIEAYVKKMGLDATG
CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCC
LMVQVDGSQGLVTVFGVAPDQATREKIILCCGNVEGVDKVEDKMSVNVESTESQWHTVVK
EEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHCCCEECCCCCEEEEEC
GDTLWAISQAAYGNGAEYNRIFEANTPMLSHPDKIYPGQKLRIPPKG
CCEEEEEEHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCC
>Mature Secondary Structure 
GMFDFIKEAGEKLFGTGEAKAAQEAAAADASTEKVDAANRAAGDAIEAYVKKMGLDATG
CHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCC
LMVQVDGSQGLVTVFGVAPDQATREKIILCCGNVEGVDKVEDKMSVNVESTESQWHTVVK
EEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHCCCEECCCCCEEEEEC
GDTLWAISQAAYGNGAEYNRIFEANTPMLSHPDKIYPGQKLRIPPKG
CCEEEEEEHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]