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The map label for this gene is yfeR [H]

Identifier: 73540292

GI number: 73540292

Start: 637965

End: 638879

Strand: Direct

Name: yfeR [H]

Synonym: Reut_A0586

Alternate gene names: 73540292

Gene position: 637965-638879 (Clockwise)

Preceding gene: 73540290

Following gene: 73540294

Centisome position: 16.76

GC content: 67.98

Gene sequence:

>915_bases
ATGAATTACACACTCCGTCAGTTGCGGGTGTTCCTCGCAGTCGCGGAAACGGGTGGTTTCAGCCGGGCCGCGGATGCCGT
TGGCCTGACCCAGTCAGCCATCAGCCGCGGCGTGGCGGAGCTGGAAGAGTCCCTTGGCGTGCGGCTGTTGGACCGGACCA
CGCGCGAGGTGGTGCTAACCCATGCCGGCCAGGCGCTGGCTCCGGCACTGGAACGTCTTCTGGGGCAGTTGGACGATACG
CTTGAAGATACGCGTGAGCTCGGCGAGCACTATCGCGGACGCGTTGTGATAGCCGGTGCCCCGACGATTTCGGCGCGGCT
GATGCCGATGTACGTGGCCGCGTGCGCCGCGCAGTACCCCGAGATCCGCCTGACCGTGCGCGACAACGTGCAGGCCGATG
GCATCGAGCAAGTGCGTGCTGGCGGCGTGGATTTTGGCGTGCTGATCGACCCGCTCGTGCACGACGGGCTCACTATCGAG
CCGCTGGTGACGGATCCGTTCTGCTTCGTGTGCCGGCGCGACCATCCGCTCGCGCAGGAGAAAACGGTCCCCTGGTCCGC
ACTGGACGGCATGCGGCTGGTGCTGCTGGACTTTGCCTCGGGCAGCCGGCCGCTGATCGATCGCGTGTTCGGACGGCACG
GCATCGTGCCGCGCGTGGTGCAGGAACTGGGCCACTCGGCCAGCGTGTTCGGCATGGTGGAGGCGGGCATCGGCGCATCG
GTATTGCCGACGTACTCGCTGCCGTTGCCGGCGGCGTCGCCTCTGGTCTGGCGGCCGCTGGTGCCGCGCGAAGAGCGGCG
CATCGTCATGGTCCGGCGCGAGGACCGTTCGCTGTCGCCTGCCGCCGAAGCGGTATGGGCGCTGGTCCGCAATCTCACCA
TCAAGGCGGCCACGCGGGAGCCGGTGGCCGGTTGA

Upstream 100 bases:

>100_bases
TGGTAAACATGCTGGACATCTAAGGGTTTAGCCTAGTATTGGACGCTACCCGGGTCTAGAATGCAAATTCATTTATCGCA
TTCATTTATCTCGTCGTTGC

Downstream 100 bases:

>100_bases
TCGATCTGCGCAACCTTAGCGTGCCCTGGCTGTGATCATGACCGCTTCCAGATCGAAGCTGCCGTCGGGCTGCACGTGAT
AGTGCTCGCCGACTTCGGCG

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MNYTLRQLRVFLAVAETGGFSRAADAVGLTQSAISRGVAELEESLGVRLLDRTTREVVLTHAGQALAPALERLLGQLDDT
LEDTRELGEHYRGRVVIAGAPTISARLMPMYVAACAAQYPEIRLTVRDNVQADGIEQVRAGGVDFGVLIDPLVHDGLTIE
PLVTDPFCFVCRRDHPLAQEKTVPWSALDGMRLVLLDFASGSRPLIDRVFGRHGIVPRVVQELGHSASVFGMVEAGIGAS
VLPTYSLPLPAASPLVWRPLVPREERRIVMVRREDRSLSPAAEAVWALVRNLTIKAATREPVAG

Sequences:

>Translated_304_residues
MNYTLRQLRVFLAVAETGGFSRAADAVGLTQSAISRGVAELEESLGVRLLDRTTREVVLTHAGQALAPALERLLGQLDDT
LEDTRELGEHYRGRVVIAGAPTISARLMPMYVAACAAQYPEIRLTVRDNVQADGIEQVRAGGVDFGVLIDPLVHDGLTIE
PLVTDPFCFVCRRDHPLAQEKTVPWSALDGMRLVLLDFASGSRPLIDRVFGRHGIVPRVVQELGHSASVFGMVEAGIGAS
VLPTYSLPLPAASPLVWRPLVPREERRIVMVRREDRSLSPAAEAVWALVRNLTIKAATREPVAG
>Mature_304_residues
MNYTLRQLRVFLAVAETGGFSRAADAVGLTQSAISRGVAELEESLGVRLLDRTTREVVLTHAGQALAPALERLLGQLDDT
LEDTRELGEHYRGRVVIAGAPTISARLMPMYVAACAAQYPEIRLTVRDNVQADGIEQVRAGGVDFGVLIDPLVHDGLTIE
PLVTDPFCFVCRRDHPLAQEKTVPWSALDGMRLVLLDFASGSRPLIDRVFGRHGIVPRVVQELGHSASVFGMVEAGIGAS
VLPTYSLPLPAASPLVWRPLVPREERRIVMVRREDRSLSPAAEAVWALVRNLTIKAATREPVAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=52.5773195876289, Blast_Score=290, Evalue=8e-80,
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=34.4709897610922, Blast_Score=195, Evalue=2e-51,
Organism=Escherichia coli, GI157672245, Length=283, Percent_Identity=32.1554770318021, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787879, Length=289, Percent_Identity=30.1038062283737, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1788887, Length=258, Percent_Identity=27.1317829457364, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790399, Length=283, Percent_Identity=26.8551236749117, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788481, Length=279, Percent_Identity=27.2401433691756, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787601, Length=175, Percent_Identity=29.1428571428571, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788297, Length=244, Percent_Identity=27.8688524590164, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI2367136, Length=242, Percent_Identity=29.3388429752066, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789204, Length=257, Percent_Identity=29.5719844357977, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786401, Length=165, Percent_Identity=32.7272727272727, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787530, Length=256, Percent_Identity=25.78125, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081904, Length=180, Percent_Identity=31.1111111111111, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786713, Length=250, Percent_Identity=27.2, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788706, Length=172, Percent_Identity=27.906976744186, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790783, Length=316, Percent_Identity=25.9493670886076, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787128, Length=159, Percent_Identity=30.188679245283, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081978, Length=181, Percent_Identity=30.3867403314917, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789639, Length=139, Percent_Identity=28.7769784172662, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1789173, Length=168, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788626, Length=244, Percent_Identity=26.6393442622951, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790208, Length=298, Percent_Identity=25.8389261744966, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788296, Length=241, Percent_Identity=23.6514522821577, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1787589, Length=145, Percent_Identity=33.1034482758621, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33049; Mature: 33049

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYTLRQLRVFLAVAETGGFSRAADAVGLTQSAISRGVAELEESLGVRLLDRTTREVVLT
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
HAGQALAPALERLLGQLDDTLEDTRELGEHYRGRVVIAGAPTISARLMPMYVAACAAQYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCC
EIRLTVRDNVQADGIEQVRAGGVDFGVLIDPLVHDGLTIEPLVTDPFCFVCRRDHPLAQE
EEEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCC
KTVPWSALDGMRLVLLDFASGSRPLIDRVFGRHGIVPRVVQELGHSASVFGMVEAGIGAS
CCCCHHHHCCCEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHCCCCCC
VLPTYSLPLPAASPLVWRPLVPREERRIVMVRREDRSLSPAAEAVWALVRNLTIKAATRE
CCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCEEEECCCC
PVAG
CCCC
>Mature Secondary Structure
MNYTLRQLRVFLAVAETGGFSRAADAVGLTQSAISRGVAELEESLGVRLLDRTTREVVLT
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
HAGQALAPALERLLGQLDDTLEDTRELGEHYRGRVVIAGAPTISARLMPMYVAACAAQYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCC
EIRLTVRDNVQADGIEQVRAGGVDFGVLIDPLVHDGLTIEPLVTDPFCFVCRRDHPLAQE
EEEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCC
KTVPWSALDGMRLVLLDFASGSRPLIDRVFGRHGIVPRVVQELGHSASVFGMVEAGIGAS
CCCCHHHHCCCEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHCCCCCC
VLPTYSLPLPAASPLVWRPLVPREERRIVMVRREDRSLSPAAEAVWALVRNLTIKAATRE
CCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCEEEECCCC
PVAG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]