| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is amiC [H]
Identifier: 73540290
GI number: 73540290
Start: 635292
End: 636791
Strand: Direct
Name: amiC [H]
Synonym: Reut_A0584
Alternate gene names: 73540290
Gene position: 635292-636791 (Clockwise)
Preceding gene: 73540289
Following gene: 73540292
Centisome position: 16.69
GC content: 65.73
Gene sequence:
>1500_bases ATGCTGATCAAGCGACTCGCCACCGACCGACCCGATGGACCCGACGGACTGCTGCAGGCCCGGCGCAAATGGATCGCGCA ATGCCTGAAATTCAGCGCCGGCACGGCCGTGCTCACGCTGGCGGGGCCGCAGCTGGTCTTTGGCGCTGGCATCGTCGCGG TACGTGTCTGGCCCGCGGAAGACTACACCCGCGTCACGATTGAATCCGACACGCCACTGGTTGCGGTGCACCGGATGGTG CGTGATCCGGACCGGCTGGTGGTGGACATCGACGGTCTCGACCTCTCGCCCACGCTGCGCGAACTCGTGGCCAAGATCAC GCCGAACGACCCGTATATCCAGACCGTGCGCGTCGGCCAGAACCGCCCGCGCGTGGTCCGCATGGTGTTCGACCTCAAGG AAAACGTCGCGCCGCAGGTGTTCACGCTGCTGCCGATCGGCAGCTACAAGAACCGCCTGGTGTTCGACCTGTACCCGGTC AATCCGCCTGATCCCCTATGGAAACTGGTGCGCGACACCGAGGAAAAGCAACGCCGCTTCGCCACCAGCGCGTCGCCGAC TGGTGCCGATGGTGTGGCCGGTGCCCCTGCCGGCGCCGAGGAAGATGCCATCGGCGCGCTGGTGCGCAAGTTCGATGAAA AGGGCGATGTGCCGGCAACCACGGCGCCACCGCCCGCCATTGCCGCGGCCAAGCCGCCGAAGCCATCAGTGCCGGTCGTG CCCAAGCCCAACGCGCCGGTGGTGCCGCCCGTCGCGCAGAACGACCCGACCGCGGAGCGTCCGTTCAAGATGCGCCGCCT GCTGACGGTGGCGATCGATCCGGGCCATGGCGGTGAAGATCCCGGCGCCATCGGCGCCTCGGGCTCGCGCGAAAAGGACG TGGTGCTGCAGATCGCGCATCGCCTGCGCGCGAAGATCGACGCGCAGCCGAATATGCGTGCCATGATGACGCGCGACGCG GATTTCTTCGTGCCGCTGAACGTACGCGTGCAGAAGGCGCGGCGCGTGCAGGCCGATTTGTTCGTGTCGATCCACGCCGA TGCGTTCCTGTCGCCGGAAGCGAAGGGCGCCTCGGTGTTCGCGCTGTCCGAGCGCGGGGCGTCGAGCACGGCCGCGCGCT GGCTTGCCAACAAAGAAAACTCATCCGACCTGATCGGTGGCGCCAACCTCAACAAGGACGCGCAGGTCGCCCGCGTGCTG CTGGACCTGTCCACCACGGCGCAGATCAACGACAGCCTGCAGGTAGGCAAGGCGGTGCTGCAGGAAATCGGCGGCATCAA CCGCCTGCACAAGGGCAGCGTGGAACAGGCGGGGTTTGCGGTGCTGAAGGCGCCGGACATTCCGTCGATCCTCGTCGAGA CCGCGTTCATCAGCAATCCCGAGGAAGAGCGCAAGCTCAATGACGATTCGCATCAGGAGCAGCTCGCTAATGCGATCTTG CGCGGGATTCGGAGCTACTTTGCGAAGAATCCACCGTTGTCGAAAAATCCGTCGGTTTGA
Upstream 100 bases:
>100_bases AATCGGACATGCCCGCTGCCGATATGAGCGATACGGCAGCCGAGCGGCGGATCGCGACGTTGCGCGCCTATACTCCCACT GGAATTACCTTGCTGAACGC
Downstream 100 bases:
>100_bases TGGGGGCGAGGCGAGGAAAATAAAAACGGGGGACATGTCCCCCGTTTTTTATGCGAATGCCAGGTTTCAGGCCCGCGCCG CAGCCCGATCCTCCACCAGC
Product: N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 499; Mature: 499
Protein sequence:
>499_residues MLIKRLATDRPDGPDGLLQARRKWIAQCLKFSAGTAVLTLAGPQLVFGAGIVAVRVWPAEDYTRVTIESDTPLVAVHRMV RDPDRLVVDIDGLDLSPTLRELVAKITPNDPYIQTVRVGQNRPRVVRMVFDLKENVAPQVFTLLPIGSYKNRLVFDLYPV NPPDPLWKLVRDTEEKQRRFATSASPTGADGVAGAPAGAEEDAIGALVRKFDEKGDVPATTAPPPAIAAAKPPKPSVPVV PKPNAPVVPPVAQNDPTAERPFKMRRLLTVAIDPGHGGEDPGAIGASGSREKDVVLQIAHRLRAKIDAQPNMRAMMTRDA DFFVPLNVRVQKARRVQADLFVSIHADAFLSPEAKGASVFALSERGASSTAARWLANKENSSDLIGGANLNKDAQVARVL LDLSTTAQINDSLQVGKAVLQEIGGINRLHKGSVEQAGFAVLKAPDIPSILVETAFISNPEEERKLNDDSHQEQLANAIL RGIRSYFAKNPPLSKNPSV
Sequences:
>Translated_499_residues MLIKRLATDRPDGPDGLLQARRKWIAQCLKFSAGTAVLTLAGPQLVFGAGIVAVRVWPAEDYTRVTIESDTPLVAVHRMV RDPDRLVVDIDGLDLSPTLRELVAKITPNDPYIQTVRVGQNRPRVVRMVFDLKENVAPQVFTLLPIGSYKNRLVFDLYPV NPPDPLWKLVRDTEEKQRRFATSASPTGADGVAGAPAGAEEDAIGALVRKFDEKGDVPATTAPPPAIAAAKPPKPSVPVV PKPNAPVVPPVAQNDPTAERPFKMRRLLTVAIDPGHGGEDPGAIGASGSREKDVVLQIAHRLRAKIDAQPNMRAMMTRDA DFFVPLNVRVQKARRVQADLFVSIHADAFLSPEAKGASVFALSERGASSTAARWLANKENSSDLIGGANLNKDAQVARVL LDLSTTAQINDSLQVGKAVLQEIGGINRLHKGSVEQAGFAVLKAPDIPSILVETAFISNPEEERKLNDDSHQEQLANAIL RGIRSYFAKNPPLSKNPSV >Mature_499_residues MLIKRLATDRPDGPDGLLQARRKWIAQCLKFSAGTAVLTLAGPQLVFGAGIVAVRVWPAEDYTRVTIESDTPLVAVHRMV RDPDRLVVDIDGLDLSPTLRELVAKITPNDPYIQTVRVGQNRPRVVRMVFDLKENVAPQVFTLLPIGSYKNRLVFDLYPV NPPDPLWKLVRDTEEKQRRFATSASPTGADGVAGAPAGAEEDAIGALVRKFDEKGDVPATTAPPPAIAAAKPPKPSVPVV PKPNAPVVPPVAQNDPTAERPFKMRRLLTVAIDPGHGGEDPGAIGASGSREKDVVLQIAHRLRAKIDAQPNMRAMMTRDA DFFVPLNVRVQKARRVQADLFVSIHADAFLSPEAKGASVFALSERGASSTAARWLANKENSSDLIGGANLNKDAQVARVL LDLSTTAQINDSLQVGKAVLQEIGGINRLHKGSVEQAGFAVLKAPDIPSILVETAFISNPEEERKLNDDSHQEQLANAIL RGIRSYFAKNPPLSKNPSV
Specific function: Cell-wall hydrolase involved in septum cleavage during cell division [H]
COG id: COG0860
COG function: function code M; N-acetylmuramoyl-L-alanine amidase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]
Homologues:
Organism=Escherichia coli, GI87082163, Length=469, Percent_Identity=44.3496801705757, Blast_Score=381, Evalue=1e-107, Organism=Escherichia coli, GI1788776, Length=219, Percent_Identity=49.7716894977169, Blast_Score=209, Evalue=4e-55, Organism=Escherichia coli, GI1790611, Length=229, Percent_Identity=43.6681222707424, Blast_Score=193, Evalue=2e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021731 - InterPro: IPR002508 - InterPro: IPR006311 [H]
Pfam domain/function: PF01520 Amidase_3; PF11741 AMIN [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 53907; Mature: 53907
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIKRLATDRPDGPDGLLQARRKWIAQCLKFSAGTAVLTLAGPQLVFGAGIVAVRVWPAE CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCEEEEEEECCC DYTRVTIESDTPLVAVHRMVRDPDRLVVDIDGLDLSPTLRELVAKITPNDPYIQTVRVGQ CCEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECC NRPRVVRMVFDLKENVAPQVFTLLPIGSYKNRLVFDLYPVNPPDPLWKLVRDTEEKQRRF CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH ATSASPTGADGVAGAPAGAEEDAIGALVRKFDEKGDVPATTAPPPAIAAAKPPKPSVPVV HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC PKPNAPVVPPVAQNDPTAERPFKMRRLLTVAIDPGHGGEDPGAIGASGSREKDVVLQIAH CCCCCCCCCCCCCCCCCCCCCHHEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH RLRAKIDAQPNMRAMMTRDADFFVPLNVRVQKARRVQADLFVSIHADAFLSPEAKGASVF HHHHHCCCCCCCEEEEECCCCEEEECCEEHHHHHHCCEEEEEEEECCEEECCCCCCCEEE ALSERGASSTAARWLANKENSSDLIGGANLNKDAQVARVLLDLSTTAQINDSLQVGKAVL EEECCCCCHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHCCCHHCCCHHHHHHHHH QEIGGINRLHKGSVEQAGFAVLKAPDIPSILVETAFISNPEEERKLNDDSHQEQLANAIL HHHCCCCHHCCCCCHHCCEEEEECCCCCHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHH RGIRSYFAKNPPLSKNPSV HHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MLIKRLATDRPDGPDGLLQARRKWIAQCLKFSAGTAVLTLAGPQLVFGAGIVAVRVWPAE CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCEEEEEEECCC DYTRVTIESDTPLVAVHRMVRDPDRLVVDIDGLDLSPTLRELVAKITPNDPYIQTVRVGQ CCEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECC NRPRVVRMVFDLKENVAPQVFTLLPIGSYKNRLVFDLYPVNPPDPLWKLVRDTEEKQRRF CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH ATSASPTGADGVAGAPAGAEEDAIGALVRKFDEKGDVPATTAPPPAIAAAKPPKPSVPVV HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC PKPNAPVVPPVAQNDPTAERPFKMRRLLTVAIDPGHGGEDPGAIGASGSREKDVVLQIAH CCCCCCCCCCCCCCCCCCCCCHHEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH RLRAKIDAQPNMRAMMTRDADFFVPLNVRVQKARRVQADLFVSIHADAFLSPEAKGASVF HHHHHCCCCCCCEEEEECCCCEEEECCEEHHHHHHCCEEEEEEEECCEEECCCCCCCEEE ALSERGASSTAARWLANKENSSDLIGGANLNKDAQVARVLLDLSTTAQINDSLQVGKAVL EEECCCCCHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHCCCHHCCCHHHHHHHHH QEIGGINRLHKGSVEQAGFAVLKAPDIPSILVETAFISNPEEERKLNDDSHQEQLANAIL HHHCCCCHHCCCCCHHCCEEEEECCCCCHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHH RGIRSYFAKNPPLSKNPSV HHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]