Click here to switch to the map view.

The map label for this gene is qseB [H]

Identifier: 73539765

GI number: 73539765

Start: 73789

End: 74517

Strand: Reverse

Name: qseB [H]

Synonym: Reut_A0059

Alternate gene names: 73539765

Gene position: 74517-73789 (Counterclockwise)

Preceding gene: 73539767

Following gene: 73539762

Centisome position: 1.96

GC content: 67.22

Gene sequence:

>729_bases
ATGCCGGACGACCTTCCCGCATCCGGAAGCGCCAGGAGAGACGACGTGAGAATTGCCGTATTGGAGGCCGACCCGACCCG
GGCCGTCGGCATTGAACAGACGCTGCGCCTCAGTGGGCACCAGTGCACGCGCTATATCCATGGCCGGTCGCTGATCCAGG
CTCTGCGGGGCGCCACTTTCGACATGTTGCTGCTCGACGGCGACACGCCGGGCATTGCGGCGCTGGACGTGCTCTCATGG
GTGCGACGAACACTCGGCCATGAGTTGCCGGTAATGTTGCTGGGCGACTCCAATGAGGAAGCGCGAATCGCCAGTTGCCT
CGCCGAAGGCGCCGACGCCTATCTGCGTAAGCCGGTGGGGATGGCCGAACTGGCCGCCCGCGTGATGGCGCTGCTGCGCC
GCGCGTGCCCGACCAGCGCGCATGGCTGCGACCTCGCCCATGGTGCTTTCCGCTTTGCCACGGCTGACCGGCGCGCCTGG
GTCCACGGCAAGGCAGTGGCGCTGGCGCCCAAGGAATTCGATCTGGCCGTCCTGCTGTTCCGCAACCTGGGCTCGCTGGT
GCTGCGCCAGACCATGGTCAACGAAGTCTGGCGCTATCACGTCGATGCGGCGTCGCGCACCGTGGACAGCCACCTGTCGC
GCGTGCGCACCAAGCTCGCGCTGTGGCCGCACAACGGCGTGCGGCTATCGGCCGTCTATGGCCTGGGGAACCGGCTGGAC
CAGTTGTGA

Upstream 100 bases:

>100_bases
GCCGGGACGTCCGAATAGGATGGGCCTCAAATCGAATTCCAGCTTTCAACAATCGTTTACTTCTTGCCCCGGGCAGCGGC
CCCTACCATGGGCGACTGCC

Downstream 100 bases:

>100_bases
AACCCCGGTCCTGTGCCGATGAAACAACTCAGTCAGCCTTGATGCCGGCTTCCTTGACGATGCGCGCGTTCTCCACGTAT
TCCTCGTGGATCGCCTTGGC

Product: response regulator receiver:transcriptional regulatory protein, C-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MPDDLPASGSARRDDVRIAVLEADPTRAVGIEQTLRLSGHQCTRYIHGRSLIQALRGATFDMLLLDGDTPGIAALDVLSW
VRRTLGHELPVMLLGDSNEEARIASCLAEGADAYLRKPVGMAELAARVMALLRRACPTSAHGCDLAHGAFRFATADRRAW
VHGKAVALAPKEFDLAVLLFRNLGSLVLRQTMVNEVWRYHVDAASRTVDSHLSRVRTKLALWPHNGVRLSAVYGLGNRLD
QL

Sequences:

>Translated_242_residues
MPDDLPASGSARRDDVRIAVLEADPTRAVGIEQTLRLSGHQCTRYIHGRSLIQALRGATFDMLLLDGDTPGIAALDVLSW
VRRTLGHELPVMLLGDSNEEARIASCLAEGADAYLRKPVGMAELAARVMALLRRACPTSAHGCDLAHGAFRFATADRRAW
VHGKAVALAPKEFDLAVLLFRNLGSLVLRQTMVNEVWRYHVDAASRTVDSHLSRVRTKLALWPHNGVRLSAVYGLGNRLD
QL
>Mature_241_residues
PDDLPASGSARRDDVRIAVLEADPTRAVGIEQTLRLSGHQCTRYIHGRSLIQALRGATFDMLLLDGDTPGIAALDVLSWV
RRTLGHELPVMLLGDSNEEARIASCLAEGADAYLRKPVGMAELAARVMALLRRACPTSAHGCDLAHGAFRFATADRRAWV
HGKAVALAPKEFDLAVLLFRNLGSLVLRQTMVNEVWRYHVDAASRTVDSHLSRVRTKLALWPHNGVRLSAVYGLGNRLDQ
L

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=206, Percent_Identity=32.5242718446602, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788394, Length=222, Percent_Identity=28.8288288288288, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790552, Length=224, Percent_Identity=27.2321428571429, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1786599, Length=225, Percent_Identity=27.5555555555556, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790860, Length=185, Percent_Identity=29.1891891891892, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786784, Length=167, Percent_Identity=28.1437125748503, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1789809, Length=230, Percent_Identity=23.9130434782609, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786911, Length=181, Percent_Identity=29.8342541436464, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367329, Length=156, Percent_Identity=31.4102564102564, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082012, Length=204, Percent_Identity=25.4901960784314, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26503; Mature: 26372

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDDLPASGSARRDDVRIAVLEADPTRAVGIEQTLRLSGHQCTRYIHGRSLIQALRGATF
CCCCCCCCCCCCCCCEEEEEEECCCCCHHCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCE
DMLLLDGDTPGIAALDVLSWVRRTLGHELPVMLLGDSNEEARIASCLAEGADAYLRKPVG
EEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
MAELAARVMALLRRACPTSAHGCDLAHGAFRFATADRRAWVHGKAVALAPKEFDLAVLLF
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEECCCCCCHHHHHH
RNLGSLVLRQTMVNEVWRYHVDAASRTVDSHLSRVRTKLALWPHNGVRLSAVYGLGNRLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCCHHHC
QL
CC
>Mature Secondary Structure 
PDDLPASGSARRDDVRIAVLEADPTRAVGIEQTLRLSGHQCTRYIHGRSLIQALRGATF
CCCCCCCCCCCCCCEEEEEEECCCCCHHCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCE
DMLLLDGDTPGIAALDVLSWVRRTLGHELPVMLLGDSNEEARIASCLAEGADAYLRKPVG
EEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
MAELAARVMALLRRACPTSAHGCDLAHGAFRFATADRRAWVHGKAVALAPKEFDLAVLLF
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEECCCCCCHHHHHH
RNLGSLVLRQTMVNEVWRYHVDAASRTVDSHLSRVRTKLALWPHNGVRLSAVYGLGNRLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCCHHHC
QL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]