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The map label for this gene is ydhC [H]

Identifier: 73539695

GI number: 73539695

Start: 2716501

End: 2717190

Strand: Direct

Name: ydhC [H]

Synonym: Reut_B5875

Alternate gene names: 73539695

Gene position: 2716501-2717190 (Clockwise)

Preceding gene: 73539690

Following gene: 73539696

Centisome position: 99.65

GC content: 63.48

Gene sequence:

>690_bases
ATGACCGACGCCATCCAACTGTTGCGTTCAAGCTCGCTGCCGATGCTGGTGCAGGAGGAAATCGAACGCCTGATCATGAC
CGGCGAACTGCCACCGGGCACGCGTATCAACGAGAGCGATATCGCGGCGCGCTTTGGCACTAGCCGCGGTCCGATCCGTG
AAGCGCTGCGCGCGCTGGAGGAAGCGGGGCTGGTCCGCAACGAGAAGAACCGCGGGGTCTTCGTGCGCGAGATTTCGGTG
GAAGAGGCCGATGAGATCTATGAACTGCGCGAGGCCCTGGAGGAAATCATCGGCAAGCGGGTGGCGCAGCGCGTCAACCC
GACGCTGGTCAGTGAACTGAACCAGCTGTTGGGCGCCATGGAAGACGTCGCCAACAAGAAAGAGGCGGCCGAGTACGCAT
CGCTGAACCTGCGGTTCCATGAACTACTGCTGCAACACGCGGGCAGCAACAAGCTCACCGAGACCTACCGGCGGCTCGTG
AAAGAGTTGCACCTGTTCCGCATGCAGGCGCTGACCCAGGGCGGAGGGCTTGATGTGTCTGCCGACGAACACCGCGCGAT
CGTGGACGCCATTGTGGCGGGCAATGCCAGGCATGCCGGCGCCGCGCTGCGCGCACACGTGGCCGCCAGCCGCGTACGCA
TGCTCAAGGCGCACCGCAAGGTGCATCCGGAAAGCAACAACGAACCATGA

Upstream 100 bases:

>100_bases
GTAAGATGAACTCAATGTAGAACGTAGTCTGAAGACTGTCAACGTAAGATTGAAAACTGTTGACAATCTACAGACGGGGA
ACTTTAATGGAGCCATGGGA

Downstream 100 bases:

>100_bases
GCTGACGCTCATCACCAAGGGGATTGGAAATGGGAACGACCAAGGCTGAACGCATTGAAGTCAACGGCAGGACCTACCGC
TGGATGAACCGCCCGGTGGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTDAIQLLRSSSLPMLVQEEIERLIMTGELPPGTRINESDIAARFGTSRGPIREALRALEEAGLVRNEKNRGVFVREISV
EEADEIYELREALEEIIGKRVAQRVNPTLVSELNQLLGAMEDVANKKEAAEYASLNLRFHELLLQHAGSNKLTETYRRLV
KELHLFRMQALTQGGGLDVSADEHRAIVDAIVAGNARHAGAALRAHVAASRVRMLKAHRKVHPESNNEP

Sequences:

>Translated_229_residues
MTDAIQLLRSSSLPMLVQEEIERLIMTGELPPGTRINESDIAARFGTSRGPIREALRALEEAGLVRNEKNRGVFVREISV
EEADEIYELREALEEIIGKRVAQRVNPTLVSELNQLLGAMEDVANKKEAAEYASLNLRFHELLLQHAGSNKLTETYRRLV
KELHLFRMQALTQGGGLDVSADEHRAIVDAIVAGNARHAGAALRAHVAASRVRMLKAHRKVHPESNNEP
>Mature_228_residues
TDAIQLLRSSSLPMLVQEEIERLIMTGELPPGTRINESDIAARFGTSRGPIREALRALEEAGLVRNEKNRGVFVREISVE
EADEIYELREALEEIIGKRVAQRVNPTLVSELNQLLGAMEDVANKKEAAEYASLNLRFHELLLQHAGSNKLTETYRRLVK
ELHLFRMQALTQGGGLDVSADEHRAIVDAIVAGNARHAGAALRAHVAASRVRMLKAHRKVHPESNNEP

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=159, Percent_Identity=28.3018867924528, Blast_Score=70, Evalue=9e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25477; Mature: 25346

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDAIQLLRSSSLPMLVQEEIERLIMTGELPPGTRINESDIAARFGTSRGPIREALRALE
CCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
EAGLVRNEKNRGVFVREISVEEADEIYELREALEEIIGKRVAQRVNPTLVSELNQLLGAM
HHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
EDVANKKEAAEYASLNLRFHELLLQHAGSNKLTETYRRLVKELHLFRMQALTQGGGLDVS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ADEHRAIVDAIVAGNARHAGAALRAHVAASRVRMLKAHRKVHPESNNEP
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TDAIQLLRSSSLPMLVQEEIERLIMTGELPPGTRINESDIAARFGTSRGPIREALRALE
CHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
EAGLVRNEKNRGVFVREISVEEADEIYELREALEEIIGKRVAQRVNPTLVSELNQLLGAM
HHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
EDVANKKEAAEYASLNLRFHELLLQHAGSNKLTETYRRLVKELHLFRMQALTQGGGLDVS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ADEHRAIVDAIVAGNARHAGAALRAHVAASRVRMLKAHRKVHPESNNEP
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]