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The map label for this gene is abgR [H]

Identifier: 73539631

GI number: 73539631

Start: 2635721

End: 2636632

Strand: Reverse

Name: abgR [H]

Synonym: Reut_B5811

Alternate gene names: 73539631

Gene position: 2636632-2635721 (Counterclockwise)

Preceding gene: 73539637

Following gene: 73539630

Centisome position: 96.72

GC content: 65.9

Gene sequence:

>912_bases
ATGAAACACCACCACCTGCGCGCCCTCGTCGCCATTGCCGATCACGGCAGCATCAACGCCGCCGCGCGCGCCCTTTGTCT
AACCCAGCCGGCCATCACCAAGGCCATGCGCGAGCTGGAGACCGAGGCCGGCGTGCCGCTGCTAGCGCGCAACTCCTGGG
GCGTGACGCTAACGAACGATGGCCAGGCGCTGCTAGCGCGAGCTCGGCTGATCGTCTGCGAGATCGAACGGGCCGAGGCC
GAGCTGGCGCAGCGGCGTGGCATCAACGAGAGCCGACTGCGGATCGGGGTGTCGCCGCTGCCCGGCATCTCGCTGCTGCC
GCCGGCATTCTCGCGATTTCGACGTGTCATGCCTGACGTGAGCGTCGACTTCCTTGAATTCGACCCGCCGCGACTGCAGG
AACACTTGCGCAACGGCCAGGTCGACTTCGGCCTCACCGCCACGCAGGTTCTGGCCGCCGATCCGTTCCTGGAGTACTCC
GAACTGTCGGTCTATCCGACATCGTTCGTAGTGCGCGCCGGCAGTCCGCTGGCCGGCGCCACCTCGCTGGCGGACCTACA
GGACGCGGAATGGCTGCACCAGGATGCGAGCAACAGCTACCCCGTATATCTCGCTGGCCTGTTCGGCCGGCACGGACTGC
CGCCGCCGCGACGCGTCACACGCAGCACGTCGAACGTCCTGTTCAGCACGCTCATGCTGGAGACTGACGCGGTGGTGCCA
CTGTCGCTGGCGTCGGTACGCTCACCCTATATCGCCAGCCTGTTGACGCCTCTCGCGCTGCCGGAGAATCCTCCGGATAT
CCAAGTGGCCTTGGTGCTTCGCGAAGGTGCGATCCTCACTCGCACGGCGGACTACTTCATCCACTGCATCCGCGAATCCA
CCGGTCTTGGGAACGGCTCGGAGCCCAAATGA

Upstream 100 bases:

>100_bases
AGGCCCATGGTAGGGAATCCCACGCCACAGCAGCAAAGCACGAAAGTTGATAACCATAACCGGGGGTTATTCAGGTAAAC
CCCTGACCGGGTAGACCCGC

Downstream 100 bases:

>100_bases
CCACCTGCCGTCCAGTGGACGTCGAAACTTGCAGTCCGAACGACCGCAATACCCAGGACTCCTGACGGTGGTCCGTCCAT
ACCTCGACACTAGGCACGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MKHHHLRALVAIADHGSINAAARALCLTQPAITKAMRELETEAGVPLLARNSWGVTLTNDGQALLARARLIVCEIERAEA
ELAQRRGINESRLRIGVSPLPGISLLPPAFSRFRRVMPDVSVDFLEFDPPRLQEHLRNGQVDFGLTATQVLAADPFLEYS
ELSVYPTSFVVRAGSPLAGATSLADLQDAEWLHQDASNSYPVYLAGLFGRHGLPPPRRVTRSTSNVLFSTLMLETDAVVP
LSLASVRSPYIASLLTPLALPENPPDIQVALVLREGAILTRTADYFIHCIRESTGLGNGSEPK

Sequences:

>Translated_303_residues
MKHHHLRALVAIADHGSINAAARALCLTQPAITKAMRELETEAGVPLLARNSWGVTLTNDGQALLARARLIVCEIERAEA
ELAQRRGINESRLRIGVSPLPGISLLPPAFSRFRRVMPDVSVDFLEFDPPRLQEHLRNGQVDFGLTATQVLAADPFLEYS
ELSVYPTSFVVRAGSPLAGATSLADLQDAEWLHQDASNSYPVYLAGLFGRHGLPPPRRVTRSTSNVLFSTLMLETDAVVP
LSLASVRSPYIASLLTPLALPENPPDIQVALVLREGAILTRTADYFIHCIRESTGLGNGSEPK
>Mature_303_residues
MKHHHLRALVAIADHGSINAAARALCLTQPAITKAMRELETEAGVPLLARNSWGVTLTNDGQALLARARLIVCEIERAEA
ELAQRRGINESRLRIGVSPLPGISLLPPAFSRFRRVMPDVSVDFLEFDPPRLQEHLRNGQVDFGLTATQVLAADPFLEYS
ELSVYPTSFVVRAGSPLAGATSLADLQDAEWLHQDASNSYPVYLAGLFGRHGLPPPRRVTRSTSNVLFSTLMLETDAVVP
LSLASVRSPYIASLLTPLALPENPPDIQVALVLREGAILTRTADYFIHCIRESTGLGNGSEPK

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=241, Percent_Identity=31.1203319502075, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789506, Length=298, Percent_Identity=26.510067114094, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788887, Length=211, Percent_Identity=33.175355450237, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081904, Length=300, Percent_Identity=24.6666666666667, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI145693105, Length=193, Percent_Identity=26.9430051813472, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1790262, Length=215, Percent_Identity=31.1627906976744, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI157672245, Length=306, Percent_Identity=24.1830065359477, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787879, Length=216, Percent_Identity=30.0925925925926, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790399, Length=154, Percent_Identity=31.8181818181818, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788297, Length=168, Percent_Identity=29.1666666666667, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI2367136, Length=166, Percent_Identity=27.1084337349398, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1789440, Length=123, Percent_Identity=34.9593495934959, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32951; Mature: 32951

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHHHLRALVAIADHGSINAAARALCLTQPAITKAMRELETEAGVPLLARNSWGVTLTND
CCCHHEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECC
GQALLARARLIVCEIERAEAELAQRRGINESRLRIGVSPLPGISLLPPAFSRFRRVMPDV
CHHHHHHHEEEEEEEHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCHHHHHHHHHCCCC
SVDFLEFDPPRLQEHLRNGQVDFGLTATQVLAADPFLEYSELSVYPTSFVVRAGSPLAGA
CEEEEECCCHHHHHHHHCCCEECCCHHHHHHHCCCCCCCCCCEECCCEEEEECCCCCCCC
TSLADLQDAEWLHQDASNSYPVYLAGLFGRHGLPPPRRVTRSTSNVLFSTLMLETDAVVP
HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
LSLASVRSPYIASLLTPLALPENPPDIQVALVLREGAILTRTADYFIHCIRESTGLGNGS
CHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEEHHHHHHHHHHHHCCCCCCC
EPK
CCC
>Mature Secondary Structure
MKHHHLRALVAIADHGSINAAARALCLTQPAITKAMRELETEAGVPLLARNSWGVTLTND
CCCHHEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECC
GQALLARARLIVCEIERAEAELAQRRGINESRLRIGVSPLPGISLLPPAFSRFRRVMPDV
CHHHHHHHEEEEEEEHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCHHHHHHHHHCCCC
SVDFLEFDPPRLQEHLRNGQVDFGLTATQVLAADPFLEYSELSVYPTSFVVRAGSPLAGA
CEEEEECCCHHHHHHHHCCCEECCCHHHHHHHCCCCCCCCCCEECCCEEEEECCCCCCCC
TSLADLQDAEWLHQDASNSYPVYLAGLFGRHGLPPPRRVTRSTSNVLFSTLMLETDAVVP
HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
LSLASVRSPYIASLLTPLALPENPPDIQVALVLREGAILTRTADYFIHCIRESTGLGNGS
CHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEEHHHHHHHHHHHHCCCCCCC
EPK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]