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The map label for this gene is ydhC [H]

Identifier: 73539588

GI number: 73539588

Start: 2593786

End: 2594451

Strand: Direct

Name: ydhC [H]

Synonym: Reut_B5768

Alternate gene names: 73539588

Gene position: 2593786-2594451 (Clockwise)

Preceding gene: 73539587

Following gene: 73539598

Centisome position: 95.14

GC content: 62.16

Gene sequence:

>666_bases
GTGTCCACCGCAGAACTACAAGGCATCGACATTCCCGCGCAGATAGCCCAGGAAATCCGCAAGCTCATTAACCGCGGACA
GTTGCCGCCCGGGTTGCAGCTACGGCAATCCGACCTAGCCGACCGCTTTGGCATCAGCCGCGTTCCCGTGCGCGAGGCGC
TGAAGCTGCTGGCGGCTGAAAGCATCATCGAACACGATCCGAACCGGGGCTTTTTCGTCGCGCCGTTGTCGACTGACGAA
GCGCGCCAGCTTTACTTGATGCGTCAACTGCTGGAAGCGGAACTGCTGTCCACGATCGAGTGGCCCACGCCCGCCCAACT
CAAGCAGTTCAAGACGATGCTGACCGAACTCGACGAACTGCTCTCGGCCGGCAACCGCTCGGAATGGATCGAGCACCATC
GCGCGTTCCACGACGCGGTGTTCGAGCTGTCCCCGAACAAGGTGCTCAAGCGCGAGGCGCTGCGGCTCATGCGGCTGACC
GACCGCTACCGCGCGTTGGCCGCCGATATCACGCTGCGCGACCAGCACCTGAACGCCAACATCGAACAGAAGCTTGTGAA
AGCGTTGAGTACCAAGAATCGGGACATGTTGCTGGATGCCTACGCCGAAGGCCGCAAGATGGTGGCCGAGGGGCTGATGC
AGATCCTCGCGGCGCGGGGCGTATGA

Upstream 100 bases:

>100_bases
CGCATTGCTACCGAAAGAACTGCGGATCGTGCCTTAAAAAGGTAATTTGGAGGTATGATTGCATTCAATATTGCATATCT
AATTCCGACTTAGCCCTACC

Downstream 100 bases:

>100_bases
AGCGGGGAGCGCTCTAGCCCCCCGTGCACCGCTGTCAGAAGCGGTGCATCATGCCGACTGCCGCCACGGATTGAATCTTC
CCGCTGGCCAGGATGTTGCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSTAELQGIDIPAQIAQEIRKLINRGQLPPGLQLRQSDLADRFGISRVPVREALKLLAAESIIEHDPNRGFFVAPLSTDE
ARQLYLMRQLLEAELLSTIEWPTPAQLKQFKTMLTELDELLSAGNRSEWIEHHRAFHDAVFELSPNKVLKREALRLMRLT
DRYRALAADITLRDQHLNANIEQKLVKALSTKNRDMLLDAYAEGRKMVAEGLMQILAARGV

Sequences:

>Translated_221_residues
MSTAELQGIDIPAQIAQEIRKLINRGQLPPGLQLRQSDLADRFGISRVPVREALKLLAAESIIEHDPNRGFFVAPLSTDE
ARQLYLMRQLLEAELLSTIEWPTPAQLKQFKTMLTELDELLSAGNRSEWIEHHRAFHDAVFELSPNKVLKREALRLMRLT
DRYRALAADITLRDQHLNANIEQKLVKALSTKNRDMLLDAYAEGRKMVAEGLMQILAARGV
>Mature_220_residues
STAELQGIDIPAQIAQEIRKLINRGQLPPGLQLRQSDLADRFGISRVPVREALKLLAAESIIEHDPNRGFFVAPLSTDEA
RQLYLMRQLLEAELLSTIEWPTPAQLKQFKTMLTELDELLSAGNRSEWIEHHRAFHDAVFELSPNKVLKREALRLMRLTD
RYRALAADITLRDQHLNANIEQKLVKALSTKNRDMLLDAYAEGRKMVAEGLMQILAARGV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25112; Mature: 24981

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAELQGIDIPAQIAQEIRKLINRGQLPPGLQLRQSDLADRFGISRVPVREALKLLAAE
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
SIIEHDPNRGFFVAPLSTDEARQLYLMRQLLEAELLSTIEWPTPAQLKQFKTMLTELDEL
HHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LSAGNRSEWIEHHRAFHDAVFELSPNKVLKREALRLMRLTDRYRALAADITLRDQHLNAN
HHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCC
IEQKLVKALSTKNRDMLLDAYAEGRKMVAEGLMQILAARGV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STAELQGIDIPAQIAQEIRKLINRGQLPPGLQLRQSDLADRFGISRVPVREALKLLAAE
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
SIIEHDPNRGFFVAPLSTDEARQLYLMRQLLEAELLSTIEWPTPAQLKQFKTMLTELDEL
HHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LSAGNRSEWIEHHRAFHDAVFELSPNKVLKREALRLMRLTDRYRALAADITLRDQHLNAN
HHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCC
IEQKLVKALSTKNRDMLLDAYAEGRKMVAEGLMQILAARGV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]