Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 73538783

GI number: 73538783

Start: 1686804

End: 1688003

Strand: Direct

Name: yfdE [H]

Synonym: Reut_B4958

Alternate gene names: 73538783

Gene position: 1686804-1688003 (Clockwise)

Preceding gene: 73538782

Following gene: 73538784

Centisome position: 61.87

GC content: 67.0

Gene sequence:

>1200_bases
ATGCAAAAACCGTTGCGCCATGTGCGCGTCCTCGACCTGACCAATGTGCTGGCCGGCCCGTTCTGCTGCCACCAGCTCGC
GCACATGGGCGCGGAAGTCATCAAGGTGGAAACGCCTGGCACCGGCGATCTCGCGCGCCAGCTCGGCGCGGATGCAGACC
TGAACCAGCGCCTGATGGGCGTGTCGTTCCTGGCGCAGAACCCGGGCAAGCAGTCGATCACGCTGAACCTCAAGCACGCG
CGCGGCAAGGAAGTGTTCCGCAAGCTCGTCCAGAGCGCCGACGTGGTGGTCGAGAACTTCCGCCCCGGCGTGATGGCGCG
GCTGGGCCTGGGCTACGACGTCCTGAAGCAGGACAACCCGCGCCTGATCTACTGTGCGATCTCGGGCTTTGGCCAGGACG
GGCCGCTGTCGGACCTGCCCGCGTATGACCAGATCATCCAGGGCATGTCGGGCGTGATGAGCATCACTGGCGATGCAGAG
ACCGCGCCGTACCGTGTCGGCTATCCGGTGTCGGACACCATCGGCGGCATTACTGCCGCATTTGCGATTGCCGCTTCGCT
GGCGGACCACCAGCGCACCGAGGGCTACTTCATCGACGTGTCGATGCTCGAAGCCACGCTCGCGACCATGGGCTGGGTCG
TGTCGAACCACCTGATCGCCGGCAAGGCACCGGCGCCGATGGGCAACGAGAACTTCACGGCCAGTCCGTCTGGCACCTTC
CGCACCGGCGACGGCCTGTTGAACATCGCCGCGAACAAGCAGGAGCAGTTCGAGGCCGTGTGCCGCGTGGTCGGCCGTCT
GGAGCTGATCGCCGATGAACGCTTCGCCGCGCGCCAGGCGCGCCTGGCGAACCGCGCCGCGCTAACGCAGGCACTAGAGG
CCGAACTTGAGAAGAAGCCCGCCAACGAGTGGTGGGCGCTGCTCAACGAGGCCGGCGTGCCGGCCGGCCCCGTACTGGGC
GTGCCACAAACGCTGGAGCAGCCGCAGGTGCGCGACCGCGGCATGATCGGGACGTTTGCCGACGTGCCCGGCGTGGGCCG
CGATATCCGCGTGGTGCGCACCGGCTTCAAGCTGAACCAGGAAGCGCCGTCGGTGGACACACCGCCCCCGCAGCTTGGCG
AACACACACAGCAGATCCTCGCCGGCCTTGGCTACAGCGAGGCCGACATCGATACCCTCAGACAGGAGCGCGCGGTATGA

Upstream 100 bases:

>100_bases
ACACGCTGGAGCGCGATCGTGCGGGAATCCGGCGCGCGCGTAGAGTAATTCGCAGCGGCCGCCTATCTCGGTCAATCCCG
CAGTCAGCAGGAATTCCATC

Downstream 100 bases:

>100_bases
GCGAGATCAATCAGGCCATGGACCCCGGCCAGCAGCTGTCCCAGGACTGGTGGCGCACGGAAATCATCGACATGCGCCCC
GGCGAAATCCGATACCGCGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MQKPLRHVRVLDLTNVLAGPFCCHQLAHMGAEVIKVETPGTGDLARQLGADADLNQRLMGVSFLAQNPGKQSITLNLKHA
RGKEVFRKLVQSADVVVENFRPGVMARLGLGYDVLKQDNPRLIYCAISGFGQDGPLSDLPAYDQIIQGMSGVMSITGDAE
TAPYRVGYPVSDTIGGITAAFAIAASLADHQRTEGYFIDVSMLEATLATMGWVVSNHLIAGKAPAPMGNENFTASPSGTF
RTGDGLLNIAANKQEQFEAVCRVVGRLELIADERFAARQARLANRAALTQALEAELEKKPANEWWALLNEAGVPAGPVLG
VPQTLEQPQVRDRGMIGTFADVPGVGRDIRVVRTGFKLNQEAPSVDTPPPQLGEHTQQILAGLGYSEADIDTLRQERAV

Sequences:

>Translated_399_residues
MQKPLRHVRVLDLTNVLAGPFCCHQLAHMGAEVIKVETPGTGDLARQLGADADLNQRLMGVSFLAQNPGKQSITLNLKHA
RGKEVFRKLVQSADVVVENFRPGVMARLGLGYDVLKQDNPRLIYCAISGFGQDGPLSDLPAYDQIIQGMSGVMSITGDAE
TAPYRVGYPVSDTIGGITAAFAIAASLADHQRTEGYFIDVSMLEATLATMGWVVSNHLIAGKAPAPMGNENFTASPSGTF
RTGDGLLNIAANKQEQFEAVCRVVGRLELIADERFAARQARLANRAALTQALEAELEKKPANEWWALLNEAGVPAGPVLG
VPQTLEQPQVRDRGMIGTFADVPGVGRDIRVVRTGFKLNQEAPSVDTPPPQLGEHTQQILAGLGYSEADIDTLRQERAV
>Mature_399_residues
MQKPLRHVRVLDLTNVLAGPFCCHQLAHMGAEVIKVETPGTGDLARQLGADADLNQRLMGVSFLAQNPGKQSITLNLKHA
RGKEVFRKLVQSADVVVENFRPGVMARLGLGYDVLKQDNPRLIYCAISGFGQDGPLSDLPAYDQIIQGMSGVMSITGDAE
TAPYRVGYPVSDTIGGITAAFAIAASLADHQRTEGYFIDVSMLEATLATMGWVVSNHLIAGKAPAPMGNENFTASPSGTF
RTGDGLLNIAANKQEQFEAVCRVVGRLELIADERFAARQARLANRAALTQALEAELEKKPANEWWALLNEAGVPAGPVLG
VPQTLEQPQVRDRGMIGTFADVPGVGRDIRVVRTGFKLNQEAPSVDTPPPQLGEHTQQILAGLGYSEADIDTLRQERAV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=379, Percent_Identity=35.6200527704486, Blast_Score=245, Evalue=6e-65,
Organism=Homo sapiens, GI300863124, Length=403, Percent_Identity=33.7468982630273, Blast_Score=237, Evalue=1e-62,
Organism=Homo sapiens, GI300863126, Length=378, Percent_Identity=31.4814814814815, Blast_Score=202, Evalue=4e-52,
Organism=Homo sapiens, GI13376042, Length=403, Percent_Identity=30.5210918114144, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=29.5, Blast_Score=156, Evalue=4e-38,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=29.5, Blast_Score=155, Evalue=5e-38,
Organism=Homo sapiens, GI266458393, Length=283, Percent_Identity=33.9222614840989, Blast_Score=135, Evalue=8e-32,
Organism=Homo sapiens, GI266458397, Length=257, Percent_Identity=34.6303501945525, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=38.0952380952381, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=38.0952380952381, Blast_Score=102, Evalue=7e-22,
Organism=Escherichia coli, GI87082093, Length=334, Percent_Identity=39.5209580838323, Blast_Score=249, Evalue=2e-67,
Organism=Escherichia coli, GI1788717, Length=429, Percent_Identity=30.0699300699301, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1786222, Length=400, Percent_Identity=26.25, Blast_Score=105, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI115535051, Length=343, Percent_Identity=26.2390670553936, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=339, Percent_Identity=24.4837758112094, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24648431, Length=400, Percent_Identity=34.25, Blast_Score=236, Evalue=3e-62,
Organism=Drosophila melanogaster, GI24585488, Length=327, Percent_Identity=29.3577981651376, Blast_Score=121, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42883; Mature: 42883

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKPLRHVRVLDLTNVLAGPFCCHQLAHMGAEVIKVETPGTGDLARQLGADADLNQRLMG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHH
VSFLAQNPGKQSITLNLKHARGKEVFRKLVQSADVVVENFRPGVMARLGLGYDVLKQDNP
HHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHCCCCC
RLIYCAISGFGQDGPLSDLPAYDQIIQGMSGVMSITGDAETAPYRVGYPVSDTIGGITAA
CEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCEEECCCHHHHHHHHHHH
FAIAASLADHQRTEGYFIDVSMLEATLATMGWVVSNHLIAGKAPAPMGNENFTASPSGTF
HHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCE
RTGDGLLNIAANKQEQFEAVCRVVGRLELIADERFAARQARLANRAALTQALEAELEKKP
ECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ANEWWALLNEAGVPAGPVLGVPQTLEQPQVRDRGMIGTFADVPGVGRDIRVVRTGFKLNQ
HHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHCCCCEECHHCCCCCCCCEEEEEECCEECC
EAPSVDTPPPQLGEHTQQILAGLGYSEADIDTLRQERAV
CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MQKPLRHVRVLDLTNVLAGPFCCHQLAHMGAEVIKVETPGTGDLARQLGADADLNQRLMG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHH
VSFLAQNPGKQSITLNLKHARGKEVFRKLVQSADVVVENFRPGVMARLGLGYDVLKQDNP
HHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHCCCCC
RLIYCAISGFGQDGPLSDLPAYDQIIQGMSGVMSITGDAETAPYRVGYPVSDTIGGITAA
CEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCEEECCCHHHHHHHHHHH
FAIAASLADHQRTEGYFIDVSMLEATLATMGWVVSNHLIAGKAPAPMGNENFTASPSGTF
HHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCE
RTGDGLLNIAANKQEQFEAVCRVVGRLELIADERFAARQARLANRAALTQALEAELEKKP
ECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ANEWWALLNEAGVPAGPVLGVPQTLEQPQVRDRGMIGTFADVPGVGRDIRVVRTGFKLNQ
HHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHCCCCEECHHCCCCCCCCEEEEEECCEECC
EAPSVDTPPPQLGEHTQQILAGLGYSEADIDTLRQERAV
CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]