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The map label for this gene is ccmH [H]

Identifier: 73538597

GI number: 73538597

Start: 1472250

End: 1472741

Strand: Direct

Name: ccmH [H]

Synonym: Reut_B4772

Alternate gene names: 73538597

Gene position: 1472250-1472741 (Clockwise)

Preceding gene: 73538596

Following gene: 73538598

Centisome position: 54.0

GC content: 68.5

Gene sequence:

>492_bases
ATGCGTAGGCCGACGCTCGCGTGCTGCGTGCTGGCGCTCTCGCTGCGTGCCATTGCCGCACCGCTCACCGACGCAGAACT
CGACGCACGCGTCCACGCGCTCTCCGAGCAACTGCGCTGCCTCGTCTGCCAGAACCAGACGCTGGCCGACTCCAACGCAG
AGCTAGCCGTCGACCTGCGCCGGCAGATCCGCGAGCAACTAAGGCAGGGCGCCAGCGACGAAGCCGTGAAGCAGTATCTC
GTGCAGCGCTACGGCGATTTCGTGCTCTACAAGCCGCCGCTGAAGCCGCTGACCTGGCTGCTGTGGTTTGGCCCGCTGCT
GTTGTTGCTCGTCGTGCTGGCGGCCCTGTGGCGCCCCCGCGCGCGCCGCGTTGCACCCGCGGGTCCCCTGGACGACGCCG
AACGCCGCAGGCTGGCGGAGTTGCTTGATGAACCGCCACCGCAGCGGTCCCCGCGTTCGATCGACACGTTGCCACCGTTA
TCGCCGCCATGA

Upstream 100 bases:

>100_bases
GCCGGCGTGATTCGCTACAAGCAGGTCGGTCCGGTGACGCAGGAGGTGCTGGAGCGCAAGCTGATCCCGTTGCTGGAGTC
TCTGCAGAAGGGGGACGGCC

Downstream 100 bases:

>100_bases
CGACCTTCTGGTTCCTTGCCGCAGCGTTGATGGCCGTGACCATGGCGGGTCTGTTATGGCCGCTATTGCGCCATTCCTCC
GGCACAACCGTCTCGGACCG

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MRRPTLACCVLALSLRAIAAPLTDAELDARVHALSEQLRCLVCQNQTLADSNAELAVDLRRQIREQLRQGASDEAVKQYL
VQRYGDFVLYKPPLKPLTWLLWFGPLLLLLVVLAALWRPRARRVAPAGPLDDAERRRLAELLDEPPPQRSPRSIDTLPPL
SPP

Sequences:

>Translated_163_residues
MRRPTLACCVLALSLRAIAAPLTDAELDARVHALSEQLRCLVCQNQTLADSNAELAVDLRRQIREQLRQGASDEAVKQYL
VQRYGDFVLYKPPLKPLTWLLWFGPLLLLLVVLAALWRPRARRVAPAGPLDDAERRRLAELLDEPPPQRSPRSIDTLPPL
SPP
>Mature_163_residues
MRRPTLACCVLALSLRAIAAPLTDAELDARVHALSEQLRCLVCQNQTLADSNAELAVDLRRQIREQLRQGASDEAVKQYL
VQRYGDFVLYKPPLKPLTWLLWFGPLLLLLVVLAALWRPRARRVAPAGPLDDAERRRLAELLDEPPPQRSPRSIDTLPPL
SPP

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=113, Percent_Identity=38.9380530973451, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1790512, Length=65, Percent_Identity=43.0769230769231, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 18327; Mature: 18327

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRPTLACCVLALSLRAIAAPLTDAELDARVHALSEQLRCLVCQNQTLADSNAELAVDLR
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
RQIREQLRQGASDEAVKQYLVQRYGDFVLYKPPLKPLTWLLWFGPLLLLLVVLAALWRPR
HHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
ARRVAPAGPLDDAERRRLAELLDEPPPQRSPRSIDTLPPLSPP
HHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRRPTLACCVLALSLRAIAAPLTDAELDARVHALSEQLRCLVCQNQTLADSNAELAVDLR
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
RQIREQLRQGASDEAVKQYLVQRYGDFVLYKPPLKPLTWLLWFGPLLLLLVVLAALWRPR
HHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
ARRVAPAGPLDDAERRRLAELLDEPPPQRSPRSIDTLPPLSPP
HHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]