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The map label for this gene is cydA [H]

Identifier: 73538114

GI number: 73538114

Start: 941408

End: 942850

Strand: Direct

Name: cydA [H]

Synonym: Reut_B4284

Alternate gene names: 73538114

Gene position: 941408-942850 (Clockwise)

Preceding gene: 73538112

Following gene: 73538115

Centisome position: 34.53

GC content: 63.48

Gene sequence:

>1443_bases
ATGTTTGGCTTCACCGCGCTAGAACTCGCCCGTATCCAATTCGGCTTCACCATTTCCTTTCACATCATCTTTCCCGCCAT
CACCATCGGACTGGCGGCGTACCTGGCAGTACTGGAAGGATGCTGGCTACGTACACAGCGCCCGGTCTACCGGGACCTGT
ATCACTTCTGGTCCAAGATCTTCGCGGTCAACTTCGGCATGGGCGTGGTCTCGGGACTGGTCATGGCGTATCAGTTCGGC
ACCAACTGGAGTTTCTTCTCCGAGTTCGCAGGCAGCATCACAGGGCCGCTACTGACCTACGAGGTGCTCACAGCCTTCTT
CCTGGAGGCAGGCTTCCTCGGCGTCATGCTGTTCGGCTGGAACCGCGTCGGACCGGGGCTGCATTTCTTCGCGACCGTCA
TGGTGGCGCTGGGCACGCTGATTTCGGCGACCTGGATCCTCGCCTCCAATAGCTGGATGCAGACACCGCAGGGCTACGAA
ATCGTCAGTGGCCGCGTGGTGCCGACGGACTGGTTCAAGGTCATCTTCAACCCGTCTTTCCCGTACCGCCTGATGCATAT
GAGCGTAGCGGCCTTCCTGGCCACGGCACTGTTCGTGGGCGCGTCCGCCGCATGGCACCTGCTGCGCGGCCGAGACAACC
CGGCCATCCGCAAGATGCTGTCGATGGCGATGTGGATGCTGCTGATCGTCGCGCCGATCCAGGCCGTGATCGGCGACATG
CATGGCCTGAACACGCTGCAGCACCAGCCGGCCAAGATCGCCGCGATGGAAGGCCACTGGGAGACCGAGCATGGCGAGCA
GGGCTTCCCGCTGCTGCTGTTCGGCCTGCCTGACATGGAGCGCGAAGAAACACGCTTTGCCGTGGGCATCCCGCGCCTGG
GCAGCCTGATCCTCACGCACAGTCTCGATGGCCAGATCAAGGGCCTGAAGGATTTCGCACCGGAAGACCGGCCCAATTCC
ACCATCCTGTTCTGGTCGTTCCGCGTAATGGTCGGCCTCGGTGTGCTGATGATCCTGCTGGGATTGTGGAGCCTGCTGCT
AAGGCGCGGCGAACGGCTATTCAAGTCGCGGGCCTTCCTGCACCTGGCGATGTGGATGGGGCCCACCGGCCTGATCGCGA
TCCTCGCCGGCTGGTTCACGACCGAGATCGGGCGGCAGCCATGGGTGGTCTACGGGCTGCAACGCACCGCCGACGCGGTC
ACGCCGCACAACGTCCCCGAACTCGCGCTCACGCTCGGCCTGTTCGTCGTCGCCTACTTCTTCGTGTTCGGCGTTGGCAT
TGCCTACATGCTGCGGCTGGTGCGCAAGGGCCCCGTGATCGACGAAGGCAAGCACGAACGCCAAGGTGGCCCCGGCCGCG
GCCACACGCCTGCACGCCCGATTTCCGCCGTCGAGGACGATGACGTGATGGCGCCCCATCAACCCGCTCGCAGCAGGAGC
TGA

Upstream 100 bases:

>100_bases
CCCGCGCCCCTGGCGCGCCTGTCGGCCAGCCTGCCACGCCTGACCGGCATGGCGACGCAGTCGACGGCGTGCGATGGGCC
AGCGCCACGGAGAACAAGAC

Downstream 100 bases:

>100_bases
CGCCATGGGCATCGACCTTTCCCTCCTCTGGATCCTCATCATCTTCTTCGGCGTGATGATGTACGTCGTCATGGATGGCT
TTGATCTTGGCATCGGCATG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MFGFTALELARIQFGFTISFHIIFPAITIGLAAYLAVLEGCWLRTQRPVYRDLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSFFSEFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGPGLHFFATVMVALGTLISATWILASNSWMQTPQGYE
IVSGRVVPTDWFKVIFNPSFPYRLMHMSVAAFLATALFVGASAAWHLLRGRDNPAIRKMLSMAMWMLLIVAPIQAVIGDM
HGLNTLQHQPAKIAAMEGHWETEHGEQGFPLLLFGLPDMEREETRFAVGIPRLGSLILTHSLDGQIKGLKDFAPEDRPNS
TILFWSFRVMVGLGVLMILLGLWSLLLRRGERLFKSRAFLHLAMWMGPTGLIAILAGWFTTEIGRQPWVVYGLQRTADAV
TPHNVPELALTLGLFVVAYFFVFGVGIAYMLRLVRKGPVIDEGKHERQGGPGRGHTPARPISAVEDDDVMAPHQPARSRS

Sequences:

>Translated_480_residues
MFGFTALELARIQFGFTISFHIIFPAITIGLAAYLAVLEGCWLRTQRPVYRDLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSFFSEFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGPGLHFFATVMVALGTLISATWILASNSWMQTPQGYE
IVSGRVVPTDWFKVIFNPSFPYRLMHMSVAAFLATALFVGASAAWHLLRGRDNPAIRKMLSMAMWMLLIVAPIQAVIGDM
HGLNTLQHQPAKIAAMEGHWETEHGEQGFPLLLFGLPDMEREETRFAVGIPRLGSLILTHSLDGQIKGLKDFAPEDRPNS
TILFWSFRVMVGLGVLMILLGLWSLLLRRGERLFKSRAFLHLAMWMGPTGLIAILAGWFTTEIGRQPWVVYGLQRTADAV
TPHNVPELALTLGLFVVAYFFVFGVGIAYMLRLVRKGPVIDEGKHERQGGPGRGHTPARPISAVEDDDVMAPHQPARSRS
>Mature_480_residues
MFGFTALELARIQFGFTISFHIIFPAITIGLAAYLAVLEGCWLRTQRPVYRDLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSFFSEFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGPGLHFFATVMVALGTLISATWILASNSWMQTPQGYE
IVSGRVVPTDWFKVIFNPSFPYRLMHMSVAAFLATALFVGASAAWHLLRGRDNPAIRKMLSMAMWMLLIVAPIQAVIGDM
HGLNTLQHQPAKIAAMEGHWETEHGEQGFPLLLFGLPDMEREETRFAVGIPRLGSLILTHSLDGQIKGLKDFAPEDRPNS
TILFWSFRVMVGLGVLMILLGLWSLLLRRGERLFKSRAFLHLAMWMGPTGLIAILAGWFTTEIGRQPWVVYGLQRTADAV
TPHNVPELALTLGLFVVAYFFVFGVGIAYMLRLVRKGPVIDEGKHERQGGPGRGHTPARPISAVEDDDVMAPHQPARSRS

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=317, Percent_Identity=39.7476340694006, Blast_Score=238, Evalue=5e-64,
Organism=Escherichia coli, GI87081779, Length=307, Percent_Identity=36.8078175895765, Blast_Score=228, Evalue=9e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 53455; Mature: 53455

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGFTALELARIQFGFTISFHIIFPAITIGLAAYLAVLEGCWLRTQRPVYRDLYHFWSKI
CCCCHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
FAVNFGMGVVSGLVMAYQFGTNWSFFSEFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
NRVGPGLHFFATVMVALGTLISATWILASNSWMQTPQGYEIVSGRVVPTDWFKVIFNPSF
CCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEECCEECCCHHHHHEECCCC
PYRLMHMSVAAFLATALFVGASAAWHLLRGRDNPAIRKMLSMAMWMLLIVAPIQAVIGDM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLNTLQHQPAKIAAMEGHWETEHGEQGFPLLLFGLPDMEREETRFAVGIPRLGSLILTH
HCCCHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHEEECCCHHHHHHHHC
SLDGQIKGLKDFAPEDRPNSTILFWSFRVMVGLGVLMILLGLWSLLLRRGERLFKSRAFL
CCCCCCCCHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLAMWMGPTGLIAILAGWFTTEIGRQPWVVYGLQRTADAVTPHNVPELALTLGLFVVAYF
HHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHH
FVFGVGIAYMLRLVRKGPVIDEGKHERQGGPGRGHTPARPISAVEDDDVMAPHQPARSRS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFGFTALELARIQFGFTISFHIIFPAITIGLAAYLAVLEGCWLRTQRPVYRDLYHFWSKI
CCCCHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
FAVNFGMGVVSGLVMAYQFGTNWSFFSEFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
NRVGPGLHFFATVMVALGTLISATWILASNSWMQTPQGYEIVSGRVVPTDWFKVIFNPSF
CCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEECCEECCCHHHHHEECCCC
PYRLMHMSVAAFLATALFVGASAAWHLLRGRDNPAIRKMLSMAMWMLLIVAPIQAVIGDM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLNTLQHQPAKIAAMEGHWETEHGEQGFPLLLFGLPDMEREETRFAVGIPRLGSLILTH
HCCCHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHEEECCCHHHHHHHHC
SLDGQIKGLKDFAPEDRPNSTILFWSFRVMVGLGVLMILLGLWSLLLRRGERLFKSRAFL
CCCCCCCCHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLAMWMGPTGLIAILAGWFTTEIGRQPWVVYGLQRTADAVTPHNVPELALTLGLFVVAYF
HHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHH
FVFGVGIAYMLRLVRKGPVIDEGKHERQGGPGRGHTPARPISAVEDDDVMAPHQPARSRS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]