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The map label for this gene is yecS [H]

Identifier: 73537419

GI number: 73537419

Start: 141433

End: 142104

Strand: Reverse

Name: yecS [H]

Synonym: Reut_B3584

Alternate gene names: 73537419

Gene position: 142104-141433 (Counterclockwise)

Preceding gene: 73537420

Following gene: 73537418

Centisome position: 5.21

GC content: 60.27

Gene sequence:

>672_bases
ATGGATCGCATCATGAGCCCTTTTGATCTGATTATTCATGCCTCCCCGGTGCTCTTGCAGGGCGCCGCGATCACCGTGAA
GTTCGCCCTGGCCTCGATGATCTTCGGCCTGTTGGTCGGGATCGTCGTTGCCATCATGGGAATCAGTGCCAGTCCTGTCC
TCAGTGGCATCGCACGCGCCTATGTCAGCGTCATGCGGGGGACGCCGCTGCTTGTGCAGATGTTTGTCGTCTACTACGGT
CTGCCCGATCTCGGCATCAATCTCGAACCCACTACTGCCGGCATCCTTACTCTCACGGCCAATGCCGGCGCTTACCTCTC
GGAAAGCATGCGCGGCGCGATCCTGGGTATCAGCCGCGGGCAATGGAGCGCGGCGCACAGTCTCGGGCTTAGTCACCTGC
AGACACTGCGTTACATCGTCTGCCCGCAGGCGCTGCGGCTGGCCGTACCGAGCCTCGGCAATACGCTAATCAGCCTGATC
AAGGACACCTCGCTGGTTTCCGTCATCACCGTAACCGAGTTGCTGAGATCGTCGCAGGAGATCATTGCCTCGACTTTCCA
ACCGCTTCCGCTCTACCTGTCAGTAGCCGCCATTTACTGGTTGCTGAGCACAGGATTGTCGTGGGTGCAGCGGCGCATCG
AGGCGCGGCTGACACTGCGCGTGACACGCTGA

Upstream 100 bases:

>100_bases
GATGCCAGCCAACCCCTCGCACAGTAACCCCAACGCCTGACCGCCTGACCGCCTGACCGCCCGCCCGTCCGGTTGCGGCC
GGGCGCGTCCGGTCAAAGCC

Downstream 100 bases:

>100_bases
TTCGCCTGCCAGGCGAAGCGCTACAACAATAATCTGCAAGCAGGAGACGAAACAATGATCGCTCTCGAAGGCGTATCGAA
ATGGTACGGTCAGTTCAAGG

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MDRIMSPFDLIIHASPVLLQGAAITVKFALASMIFGLLVGIVVAIMGISASPVLSGIARAYVSVMRGTPLLVQMFVVYYG
LPDLGINLEPTTAGILTLTANAGAYLSESMRGAILGISRGQWSAAHSLGLSHLQTLRYIVCPQALRLAVPSLGNTLISLI
KDTSLVSVITVTELLRSSQEIIASTFQPLPLYLSVAAIYWLLSTGLSWVQRRIEARLTLRVTR

Sequences:

>Translated_223_residues
MDRIMSPFDLIIHASPVLLQGAAITVKFALASMIFGLLVGIVVAIMGISASPVLSGIARAYVSVMRGTPLLVQMFVVYYG
LPDLGINLEPTTAGILTLTANAGAYLSESMRGAILGISRGQWSAAHSLGLSHLQTLRYIVCPQALRLAVPSLGNTLISLI
KDTSLVSVITVTELLRSSQEIIASTFQPLPLYLSVAAIYWLLSTGLSWVQRRIEARLTLRVTR
>Mature_223_residues
MDRIMSPFDLIIHASPVLLQGAAITVKFALASMIFGLLVGIVVAIMGISASPVLSGIARAYVSVMRGTPLLVQMFVVYYG
LPDLGINLEPTTAGILTLTANAGAYLSESMRGAILGISRGQWSAAHSLGLSHLQTLRYIVCPQALRLAVPSLGNTLISLI
KDTSLVSVITVTELLRSSQEIIASTFQPLPLYLSVAAIYWLLSTGLSWVQRRIEARLTLRVTR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=210, Percent_Identity=43.3333333333333, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=39.0476190476191, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI1788646, Length=220, Percent_Identity=30.9090909090909, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1786873, Length=222, Percent_Identity=32.4324324324324, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787087, Length=225, Percent_Identity=28.4444444444444, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787086, Length=218, Percent_Identity=31.1926605504587, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI1788645, Length=208, Percent_Identity=32.2115384615385, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082239, Length=188, Percent_Identity=30.8510638297872, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786874, Length=167, Percent_Identity=29.3413173652695, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23949; Mature: 23949

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIMSPFDLIIHASPVLLQGAAITVKFALASMIFGLLVGIVVAIMGISASPVLSGIARA
CCCCCCHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
YVSVMRGTPLLVQMFVVYYGLPDLGINLEPTTAGILTLTANAGAYLSESMRGAILGISRG
HHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCHHEEEECCC
QWSAAHSLGLSHLQTLRYIVCPQALRLAVPSLGNTLISLIKDTSLVSVITVTELLRSSQE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIASTFQPLPLYLSVAAIYWLLSTGLSWVQRRIEARLTLRVTR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure
MDRIMSPFDLIIHASPVLLQGAAITVKFALASMIFGLLVGIVVAIMGISASPVLSGIARA
CCCCCCHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
YVSVMRGTPLLVQMFVVYYGLPDLGINLEPTTAGILTLTANAGAYLSESMRGAILGISRG
HHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCHHEEEECCC
QWSAAHSLGLSHLQTLRYIVCPQALRLAVPSLGNTLISLIKDTSLVSVITVTELLRSSQE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIASTFQPLPLYLSVAAIYWLLSTGLSWVQRRIEARLTLRVTR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]