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The map label for this gene is csp [H]

Identifier: 71911578

GI number: 71911578

Start: 1726161

End: 1726370

Strand: Reverse

Name: csp [H]

Synonym: M5005_Spy_1765

Alternate gene names: 71911578

Gene position: 1726370-1726161 (Counterclockwise)

Preceding gene: 71911579

Following gene: 71911577

Centisome position: 93.9

GC content: 36.67

Gene sequence:

>210_bases
ATGTATATGGCACAAGGTACAGTAAAATGGTTTAATGCTGAAAAAGGTTTTGGTTTTATTTCAACTGAAAACGGTCAAGA
TGTCTTTGCACATTTTTCAGCCATCCAAACTAATGGTTTTAAAACGTTAGAAGAAGGACAAAAAGTGGCATTTGACGTCG
AAGAAGGTCAACGTGGACCTCAAGCAGTCAATATCACTAAATTGGCCTAA

Upstream 100 bases:

>100_bases
GTGTTACTCTTAGTGAGTAAATTAGTTTTTGAGTTAGTATTTGTGTTTCAACATCTTTATTTCTCTCTATTTTTACAAAT
GATTTTTAGAAAGGAAGTGG

Downstream 100 bases:

>100_bases
TCTGGTTAAAGTAACTAAAGAGAAGCAGATGTTGGAAACAGCAACTGCTTTTTTGATTTCTACCAGTTACCTTTAATGAT
TAAGAGTTGCGTTTAAGGTC

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MYMAQGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVNITKLA

Sequences:

>Translated_69_residues
MYMAQGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVNITKLA
>Mature_69_residues
MYMAQGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVNITKLA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=62.5, Blast_Score=90, Evalue=4e-20,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=60.8695652173913, Blast_Score=89, Evalue=5e-20,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=60.8695652173913, Blast_Score=89, Evalue=7e-20,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=62.5, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=60.9375, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=62.2950819672131, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=53.7313432835821, Blast_Score=77, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7617; Mature: 7617

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYMAQGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGP
CCCCCCEEEEEECCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCC
QAVNITKLA
CEEEEEECC
>Mature Secondary Structure
MYMAQGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGP
CCCCCCEEEEEECCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCC
QAVNITKLA
CEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]