Click here to switch to the map view.

The map label for this gene is ctsR [H]

Identifier: 71911577

GI number: 71911577

Start: 1725504

End: 1725965

Strand: Reverse

Name: ctsR [H]

Synonym: M5005_Spy_1764

Alternate gene names: 71911577

Gene position: 1725965-1725504 (Counterclockwise)

Preceding gene: 71911578

Following gene: 71911576

Centisome position: 93.88

GC content: 39.61

Gene sequence:

>462_bases
ATGCCAACCAAAAATACTTCAGACAGCATTGAAGAGTATATTAAAGAATTATTAGCTAAGTCAGGAATAGCAGAAATTAA
GCGGTCCATGCTAGCAGATTCGTTTCAAGTTGTCCCAAGTCAGATCAACTATGTCATTAAAACCCGTTTTACGGAGAGTC
GAGGCTATGAAGTAGAGAGTAAACGAGGTGGTGGAGGCTATATTCGTATTGCCAAGGTTCATTTTTCAGACAAACACCAT
CTGATTGGCAATTTAATGGCAACTATTGAAGACTGTATCAGTGAGCAAGTTTTCACGGACTCGATACAATTGCTTTTTGA
CGAACACTTATTGACAGAGCGTGAGGGAAATATCATTTTGGCTGTGGCGTCTGATGATGTTTTAGGAACTGATGGTTCAA
CTATTCGTGCACGAATGCTCTATCGCTTATTGCAACGAATTGACAGAAAGGGAAGCAATTAA

Upstream 100 bases:

>100_bases
AGGTCTTGTATTTGTTATAATAATAGTCAGTTTTAGTCAAAATGTATTGACGTGGTGCTACTAAGTTTTTAGAGTAGCCC
GCAAGCAAAGGAGTGACAGC

Downstream 100 bases:

>100_bases
TGATTATGTATTCAACGAAGATGCAAGACATTTTTAGACAGGCGCAGTTCCAAGCTGCTCGCTTTGATAGCCATTGCCTG
GAAACTTGGCATGTTTTGTT

Product: transcriptional regulator

Products: NA

Alternate protein names: Class three stress gene repressor [H]

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MPTKNTSDSIEEYIKELLAKSGIAEIKRSMLADSFQVVPSQINYVIKTRFTESRGYEVESKRGGGGYIRIAKVHFSDKHH
LIGNLMATIEDCISEQVFTDSIQLLFDEHLLTEREGNIILAVASDDVLGTDGSTIRARMLYRLLQRIDRKGSN

Sequences:

>Translated_153_residues
MPTKNTSDSIEEYIKELLAKSGIAEIKRSMLADSFQVVPSQINYVIKTRFTESRGYEVESKRGGGGYIRIAKVHFSDKHH
LIGNLMATIEDCISEQVFTDSIQLLFDEHLLTEREGNIILAVASDDVLGTDGSTIRARMLYRLLQRIDRKGSN
>Mature_152_residues
PTKNTSDSIEEYIKELLAKSGIAEIKRSMLADSFQVVPSQINYVIKTRFTESRGYEVESKRGGGGYIRIAKVHFSDKHHL
IGNLMATIEDCISEQVFTDSIQLLFDEHLLTEREGNIILAVASDDVLGTDGSTIRARMLYRLLQRIDRKGSN

Specific function: Controls the expression of the cellular protein quality control genes clpC, clpE and clpP. Acts as a repressor of these class III stress genes by binding to a directly repeated heptanucleotide operator sequence (A/GGTCAAA NAN A/GGTCAAA). After heat shock,

COG id: COG4463

COG function: function code K; Transcriptional repressor of class III stress genes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CtsR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008463 [H]

Pfam domain/function: PF05848 CtsR [H]

EC number: NA

Molecular weight: Translated: 17237; Mature: 17106

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTKNTSDSIEEYIKELLAKSGIAEIKRSMLADSFQVVPSQINYVIKTRFTESRGYEVES
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCC
KRGGGGYIRIAKVHFSDKHHLIGNLMATIEDCISEQVFTDSIQLLFDEHLLTEREGNIIL
CCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
AVASDDVLGTDGSTIRARMLYRLLQRIDRKGSN
EEECCCEECCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PTKNTSDSIEEYIKELLAKSGIAEIKRSMLADSFQVVPSQINYVIKTRFTESRGYEVES
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCC
KRGGGGYIRIAKVHFSDKHHLIGNLMATIEDCISEQVFTDSIQLLFDEHLLTEREGNIIL
CCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
AVASDDVLGTDGSTIRARMLYRLLQRIDRKGSN
EEECCCEECCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]