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The map label for this gene is ydcO [H]

Identifier: 71908373

GI number: 71908373

Start: 2961056

End: 2962303

Strand: Reverse

Name: ydcO [H]

Synonym: Daro_2760

Alternate gene names: 71908373

Gene position: 2962303-2961056 (Counterclockwise)

Preceding gene: 71908374

Following gene: 71908372

Centisome position: 65.81

GC content: 59.21

Gene sequence:

>1248_bases
ATGTTTTCTCATCTTGAGCGCCCTGTTGCGAAGCTTTCCGGCCCGAGGCAGGTCTTTGCCGATTCTGGCCTGGGGTATAT
CGCCAACGGCCTGATCGGTTTCATCTTTTCAGCCACCGGTCCGGTCGCCATCATTCTTTCCGTCGGGACTGGCGGCGGCC
TGAGTCAGGCTGAGCTGGCGTCGTGGATCTTTGGCGTTTTCTTCATCAACGGCCTGATCACCATTGCGATGAGCTGGCGT
TACAAGATGCCGCTTGGCTTCGCCTGGACGATTCCCGGAACGGTCCTGATCGGTCCGGCGCTGCAACACCTGAGTTTTGC
GGAAGTGATCGGCGCCTATTATGTGACCGGTTTTTTGGTGGTCATGCTGGGGGCCAGTGGCTGGGTCAAACGACTGATGT
CAGCCTTGCCCATGCCCATCGTGATGGGCATGGTGGCCGGGGTTTTTCTCCGATTCGGTCTGGACCTGGTTCGGGCACTG
CATAGCGACGTGGCGATCGCTGCGCCGATGGTTATTGCATTCCTGTTCCTGTCGGCCGTTCCTGCCTGGGGCAAGCGTCT
GCCACCAGTGATTGGCGCGTTGCTGGTTGGTGCGATAGCCATCGTTATTCTTGGTCGCATCGGACTATCCACGTTAGAGG
GAGTCACGCTGGCTCACCCCGTTATTCAGATGCCAGTCTGGACTCCGGGAGCCCTGGTTGAACTGGTCGTGCCGCTTGCC
ATCACGGTCCTGGTGGTTCAGAACGGGCAGGGCGTTGCCGTATTGAAGTCGGCGCGCCACGATCCGCCGGTCAACACCAT
CGCCTTTGTTTCCGGTCTTGGCGGACTGCTCAGTGCGGCTGTCGGCGCGGTCAGCTCATGTCTGACCGGTCCGACCAATG
CCTTGCTTACCTCATCCGGCGAACTGGATCGGCAATATACCGCCGCCCTGTCTTTTGGCGTTTTCGGTGTGTTGTTCGGC
TTGCTGGCGCCAAGTTTTACCGGCCTGGCGCTTGCTGCGCCAAAGGAGTACATCATGGTGCTTGGCGGACTGGCCATGCT
GAGGGTTTTACAAGGCGCCTTCATCGCCTCTTTCGGTGGCGGGAAATTTACCCTTGGCGCCTTGATCAGCCTGCTGGTCA
CTGTGGCTGACATCGGCATCCTCAATATCGGTGCGGCCTTCTGGTCTTTGGTCGCAGGCTTTCTCGTCTCCTGGCTGATG
GAGAAGCGCGACTTCATCGCACTGGCCAACGCGATCGATGCGCCCTGA

Upstream 100 bases:

>100_bases
TCGCCGGCAGCCAACTCAGGTTGAGTGCTGAGGAGCGGGCCATTCTCGAGGCGCCTTACCATCCACGTCCCGTCGTTGGA
CACGACTGAGGCGGAGTCTG

Downstream 100 bases:

>100_bases
TTGGCTTCTGTCGATAACGCGGCTGATGGTTACGTTCAAGCAGAGCGCTTTTTAGCAGCGCAACAGCCGTTGCTGGGTGA
ATTCAGTGCTTGTTCAGAGG

Product: benzoate membrane transport protein:xanthine/uracil/vitamin C permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MFSHLERPVAKLSGPRQVFADSGLGYIANGLIGFIFSATGPVAIILSVGTGGGLSQAELASWIFGVFFINGLITIAMSWR
YKMPLGFAWTIPGTVLIGPALQHLSFAEVIGAYYVTGFLVVMLGASGWVKRLMSALPMPIVMGMVAGVFLRFGLDLVRAL
HSDVAIAAPMVIAFLFLSAVPAWGKRLPPVIGALLVGAIAIVILGRIGLSTLEGVTLAHPVIQMPVWTPGALVELVVPLA
ITVLVVQNGQGVAVLKSARHDPPVNTIAFVSGLGGLLSAAVGAVSSCLTGPTNALLTSSGELDRQYTAALSFGVFGVLFG
LLAPSFTGLALAAPKEYIMVLGGLAMLRVLQGAFIASFGGGKFTLGALISLLVTVADIGILNIGAAFWSLVAGFLVSWLM
EKRDFIALANAIDAP

Sequences:

>Translated_415_residues
MFSHLERPVAKLSGPRQVFADSGLGYIANGLIGFIFSATGPVAIILSVGTGGGLSQAELASWIFGVFFINGLITIAMSWR
YKMPLGFAWTIPGTVLIGPALQHLSFAEVIGAYYVTGFLVVMLGASGWVKRLMSALPMPIVMGMVAGVFLRFGLDLVRAL
HSDVAIAAPMVIAFLFLSAVPAWGKRLPPVIGALLVGAIAIVILGRIGLSTLEGVTLAHPVIQMPVWTPGALVELVVPLA
ITVLVVQNGQGVAVLKSARHDPPVNTIAFVSGLGGLLSAAVGAVSSCLTGPTNALLTSSGELDRQYTAALSFGVFGVLFG
LLAPSFTGLALAAPKEYIMVLGGLAMLRVLQGAFIASFGGGKFTLGALISLLVTVADIGILNIGAAFWSLVAGFLVSWLM
EKRDFIALANAIDAP
>Mature_415_residues
MFSHLERPVAKLSGPRQVFADSGLGYIANGLIGFIFSATGPVAIILSVGTGGGLSQAELASWIFGVFFINGLITIAMSWR
YKMPLGFAWTIPGTVLIGPALQHLSFAEVIGAYYVTGFLVVMLGASGWVKRLMSALPMPIVMGMVAGVFLRFGLDLVRAL
HSDVAIAAPMVIAFLFLSAVPAWGKRLPPVIGALLVGAIAIVILGRIGLSTLEGVTLAHPVIQMPVWTPGALVELVVPLA
ITVLVVQNGQGVAVLKSARHDPPVNTIAFVSGLGGLLSAAVGAVSSCLTGPTNALLTSSGELDRQYTAALSFGVFGVLFG
LLAPSFTGLALAAPKEYIMVLGGLAMLRVLQGAFIASFGGGKFTLGALISLLVTVADIGILNIGAAFWSLVAGFLVSWLM
EKRDFIALANAIDAP

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=381, Percent_Identity=28.8713910761155, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 42982; Mature: 42982

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSHLERPVAKLSGPRQVFADSGLGYIANGLIGFIFSATGPVAIILSVGTGGGLSQAELA
CCCHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHH
SWIFGVFFINGLITIAMSWRYKMPLGFAWTIPGTVLIGPALQHLSFAEVIGAYYVTGFLV
HHHHHHHHHHHHHHHHHHCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMLGASGWVKRLMSALPMPIVMGMVAGVFLRFGLDLVRALHSDVAIAAPMVIAFLFLSAV
HHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAWGKRLPPVIGALLVGAIAIVILGRIGLSTLEGVTLAHPVIQMPVWTPGALVELVVPLA
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHH
ITVLVVQNGQGVAVLKSARHDPPVNTIAFVSGLGGLLSAAVGAVSSCLTGPTNALLTSSG
HHHHEEECCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC
ELDRQYTAALSFGVFGVLFGLLAPSFTGLALAAPKEYIMVLGGLAMLRVLQGAFIASFGG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
GKFTLGALISLLVTVADIGILNIGAAFWSLVAGFLVSWLMEKRDFIALANAIDAP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFSHLERPVAKLSGPRQVFADSGLGYIANGLIGFIFSATGPVAIILSVGTGGGLSQAELA
CCCHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHH
SWIFGVFFINGLITIAMSWRYKMPLGFAWTIPGTVLIGPALQHLSFAEVIGAYYVTGFLV
HHHHHHHHHHHHHHHHHHCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMLGASGWVKRLMSALPMPIVMGMVAGVFLRFGLDLVRALHSDVAIAAPMVIAFLFLSAV
HHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAWGKRLPPVIGALLVGAIAIVILGRIGLSTLEGVTLAHPVIQMPVWTPGALVELVVPLA
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHH
ITVLVVQNGQGVAVLKSARHDPPVNTIAFVSGLGGLLSAAVGAVSSCLTGPTNALLTSSG
HHHHEEECCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC
ELDRQYTAALSFGVFGVLFGLLAPSFTGLALAAPKEYIMVLGGLAMLRVLQGAFIASFGG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
GKFTLGALISLLVTVADIGILNIGAAFWSLVAGFLVSWLMEKRDFIALANAIDAP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]