| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is 71908178
Identifier: 71908178
GI number: 71908178
Start: 2761319
End: 2762641
Strand: Reverse
Name: 71908178
Synonym: Daro_2562
Alternate gene names: NA
Gene position: 2762641-2761319 (Counterclockwise)
Preceding gene: 71908180
Following gene: 71908177
Centisome position: 61.38
GC content: 61.6
Gene sequence:
>1323_bases ATGGTCCATCTCAACCCACATCCAGCGGTTGCCGTACCGGGTGGCGGCATCACACCAACCCTGCTCGGGCAAAGCCCCGC CCGTATTCCGACCGGCGGCAAAATCCGCGCCGGTATCAAGGTGCTGACGAAGAAAGCTGCTGAGCAGTCCAAGGCCAAGG CAATCTACGAGCAGGGCGTAGCTGCTGGCCAGTCCTTCGAGCAGATCGAACGCGCTCTTGCCGAAGCACTGCCTAATCTC AAGACACCCTTGGTGCCGCGCAACGTGCCGTGGTTCACCGTGCGTGGCCAGGATTTCCCCAATCCCGAGGTCGCTGCACA GATTCTGGCGGCCTACGCAGAGGAGCGGGGCGAGGGGCGGCACCTGTATCGCTTCCCGGTGGTATTTCCTTCCGACTACT GGCAGACCGTGATGCCGCACGAACTGGCGGCCTGGGGAATGCACGACAAGCATTACTGGTCGCAATATTCGGCCGATGGC CGGGTGCGCCATTGCATGTGCCATGCGCCGGTGCCGGTGGACGATACGGGGCGGCGCACGATCCGTCTCTTCGGTGGGCG CAAGACCGTGGTCCGCGAGGAGAATAACGGTCTGTGTGAACCGGAGGCCTGCCGCGAGTACCAATCGCGTCAGTGCAACC TGACCGGGCGATTCCTGTTTTTCATACCTGGCATCCGCTCGATCAGTGCTTTCGAATTGCACACCAACAGTTTCTACGCG ATGAATGCGGCGATCCAGAAGTTCGAGACAGTCGGCTTCCTGCGTGGCGGGCGCATCTCCGGTTTCCTTGATCGGCAGCG AACACCGTTCTATCTGACCAAGAGGTTGATGGAGGTTGCCCATATCGATGAGCGGGGCCGGGCCGTGCGCGTGCCGCAGT GGATCATTGATCTTGAGGCACCGGTGGACGTCACTGCCTTGCTGCGCGATAACGAGGACACCGAGACGGCCCTGCTGCAG GCGCAACTAGCGACGCAGGTACTGCAAATCAGTACGGTCGAGGCCTCTGCTGAAATGGCGCAATCTGATGAGGGCGAGGT CCGCTCATCCCCAATGGTCGATGCCTCGCCTGGCGACGAGCCGCCGCTCCAGAACGGGCATCCCAGTTTCGAGCAACTGA TGGCACGGGTGCAGGCTTACGGCATCGTGCCTGAACAGTATCGGTCCTACGCCGACCGGCGCTGGGGACCAGGCTGGAAG ATCAACCCCCATGGTCGCGCCCAGGCTTGGAATGAACTGGAGCGCTACAGCAACGATCCACAGGGCTACCGTGACAAGAT CGAGAGCGAAATGCAGTTGGTGTCGCGGGGGAGAACGGCATGA
Upstream 100 bases:
>100_bases CAAGGGGGGGCCGTGAGTGATTCCGTCGGGGTTGAAACGGAGGCAGGTCGCGAGAGCATGAATTGTCGAAATATCCCAAC TTTCATGGAGGAGCGCCGTC
Downstream 100 bases:
>100_bases TCCGCATCGCGCATTTCTCCGATCTGCACTACGGCACAAAAAACCGGGTGGAGGCGGATCGCTGTTTCGGCGCCGCCATC GACCGGGCCATTGCCCTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 440; Mature: 440
Protein sequence:
>440_residues MVHLNPHPAVAVPGGGITPTLLGQSPARIPTGGKIRAGIKVLTKKAAEQSKAKAIYEQGVAAGQSFEQIERALAEALPNL KTPLVPRNVPWFTVRGQDFPNPEVAAQILAAYAEERGEGRHLYRFPVVFPSDYWQTVMPHELAAWGMHDKHYWSQYSADG RVRHCMCHAPVPVDDTGRRTIRLFGGRKTVVREENNGLCEPEACREYQSRQCNLTGRFLFFIPGIRSISAFELHTNSFYA MNAAIQKFETVGFLRGGRISGFLDRQRTPFYLTKRLMEVAHIDERGRAVRVPQWIIDLEAPVDVTALLRDNEDTETALLQ AQLATQVLQISTVEASAEMAQSDEGEVRSSPMVDASPGDEPPLQNGHPSFEQLMARVQAYGIVPEQYRSYADRRWGPGWK INPHGRAQAWNELERYSNDPQGYRDKIESEMQLVSRGRTA
Sequences:
>Translated_440_residues MVHLNPHPAVAVPGGGITPTLLGQSPARIPTGGKIRAGIKVLTKKAAEQSKAKAIYEQGVAAGQSFEQIERALAEALPNL KTPLVPRNVPWFTVRGQDFPNPEVAAQILAAYAEERGEGRHLYRFPVVFPSDYWQTVMPHELAAWGMHDKHYWSQYSADG RVRHCMCHAPVPVDDTGRRTIRLFGGRKTVVREENNGLCEPEACREYQSRQCNLTGRFLFFIPGIRSISAFELHTNSFYA MNAAIQKFETVGFLRGGRISGFLDRQRTPFYLTKRLMEVAHIDERGRAVRVPQWIIDLEAPVDVTALLRDNEDTETALLQ AQLATQVLQISTVEASAEMAQSDEGEVRSSPMVDASPGDEPPLQNGHPSFEQLMARVQAYGIVPEQYRSYADRRWGPGWK INPHGRAQAWNELERYSNDPQGYRDKIESEMQLVSRGRTA >Mature_440_residues MVHLNPHPAVAVPGGGITPTLLGQSPARIPTGGKIRAGIKVLTKKAAEQSKAKAIYEQGVAAGQSFEQIERALAEALPNL KTPLVPRNVPWFTVRGQDFPNPEVAAQILAAYAEERGEGRHLYRFPVVFPSDYWQTVMPHELAAWGMHDKHYWSQYSADG RVRHCMCHAPVPVDDTGRRTIRLFGGRKTVVREENNGLCEPEACREYQSRQCNLTGRFLFFIPGIRSISAFELHTNSFYA MNAAIQKFETVGFLRGGRISGFLDRQRTPFYLTKRLMEVAHIDERGRAVRVPQWIIDLEAPVDVTALLRDNEDTETALLQ AQLATQVLQISTVEASAEMAQSDEGEVRSSPMVDASPGDEPPLQNGHPSFEQLMARVQAYGIVPEQYRSYADRRWGPGWK INPHGRAQAWNELERYSNDPQGYRDKIESEMQLVSRGRTA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49345; Mature: 49345
Theoretical pI: Translated: 7.66; Mature: 7.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVHLNPHPAVAVPGGGITPTLLGQSPARIPTGGKIRAGIKVLTKKAAEQSKAKAIYEQGV CCCCCCCCCEEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AAGQSFEQIERALAEALPNLKTPLVPRNVPWFTVRGQDFPNPEVAAQILAAYAEERGEGR HCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCC HLYRFPVVFPSDYWQTVMPHELAAWGMHDKHYWSQYSADGRVRHCMCHAPVPVDDTGRRT EEEEEEEECCCHHHHHHCCHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCEE IRLFGGRKTVVREENNGLCEPEACREYQSRQCNLTGRFLFFIPGIRSISAFELHTNSFYA EEEECCCEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEECCCEEH MNAAIQKFETVGFLRGGRISGFLDRQRTPFYLTKRLMEVAHIDERGRAVRVPQWIIDLEA HHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECCCEEEEECC PVDVTALLRDNEDTETALLQAQLATQVLQISTVEASAEMAQSDEGEVRSSPMVDASPGDE CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PPLQNGHPSFEQLMARVQAYGIVPEQYRSYADRRWGPGWKINPHGRAQAWNELERYSNDP CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHCCCC QGYRDKIESEMQLVSRGRTA CHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MVHLNPHPAVAVPGGGITPTLLGQSPARIPTGGKIRAGIKVLTKKAAEQSKAKAIYEQGV CCCCCCCCCEEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AAGQSFEQIERALAEALPNLKTPLVPRNVPWFTVRGQDFPNPEVAAQILAAYAEERGEGR HCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCC HLYRFPVVFPSDYWQTVMPHELAAWGMHDKHYWSQYSADGRVRHCMCHAPVPVDDTGRRT EEEEEEEECCCHHHHHHCCHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCEE IRLFGGRKTVVREENNGLCEPEACREYQSRQCNLTGRFLFFIPGIRSISAFELHTNSFYA EEEECCCEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEECCCEEH MNAAIQKFETVGFLRGGRISGFLDRQRTPFYLTKRLMEVAHIDERGRAVRVPQWIIDLEA HHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECCCEEEEECC PVDVTALLRDNEDTETALLQAQLATQVLQISTVEASAEMAQSDEGEVRSSPMVDASPGDE CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PPLQNGHPSFEQLMARVQAYGIVPEQYRSYADRRWGPGWKINPHGRAQAWNELERYSNDP CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHCCCC QGYRDKIESEMQLVSRGRTA CHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA