Click here to switch to the map view.

The map label for this gene is nlpD [C]

Identifier: 71908138

GI number: 71908138

Start: 2719946

End: 2720860

Strand: Reverse

Name: nlpD [C]

Synonym: Daro_2522

Alternate gene names: 71908138

Gene position: 2720860-2719946 (Counterclockwise)

Preceding gene: 71908139

Following gene: 71908137

Centisome position: 60.45

GC content: 58.91

Gene sequence:

>915_bases
ATGATTCGAATCGCCGCTGTAATTCTTTCTACACTGCTTCTGGCTGGTTGCATGTCTCAGCAGCCGGTGCCGGCTGTGGA
CCGCTCGGGAACGGCACAATCCAGAGCCGCGAGTGTCGCTCAACCAACGGGGCCGGGCTATTACACGGTCAAGCGTGGCG
ATACCCTGTATCGGATTGCTCTGGAAAATGGCCAGGACCATCGAGATATTGCTGCCTGGAACAATATCGCCAATCCGTCG
GCGATCAAGGAAGGCCAGGTTTTGCGCGTACAGCCGCCGGGGACTTCAGAGTCCGTTGATGGCGTGACGACCAAGCCAAT
TGCAAGCGGCGCTGTCGTTGAGGCGCGTTCGCTGGATCAGCCCGTCGGAACTTCGGTATCGCAGCCTAGTGGCTTGAAAC
GTGAGCCGCGTGTTGGCAAGGAGCCGTATTCCGACGAGGCTTATGCTCGCTTGAACAAGACGGGCGAACCGGCCAAAGCT
GTCGAGGCCAAGCCGGAAACGAAACCGGATGTGCCGGCTGCGGCCCCAGCCGTGGCTTCTGGTCCGGATGATGTGCCCTG
GTTATGGCCGAGTTCGGCCAAGGTGTCCGCGCCGTACAGCGACTCCGGCAACAAGGGGCTGGATTTTGCTGGCAAGGCTG
GCGATCCCGTCCTTGCAGCGGGCGATGGCAAGGTGGTCTACGCTGGCAGCGGCTTGCGTGGTTTTGGCGAGTTGGTCATC
GTCAAGCACAACGCGACCTACCTTTCTGCGTATGCTCATAATCGCAAGATTCTCGTCAAGGAAGGCCAACAGGTCAGCCG
AGGGCAAAAGATTGCCGAAATGGGCAACACGGATGCGGAGTCGGTCAAGCTGCATTTCGAAATCCGCAAACAGGGTAAGC
CGGTTGATCCGGCACAGTATCTACCGAAGCGATGA

Upstream 100 bases:

>100_bases
CTGGTGAACAGTATCTTAGCTTTATCGAACATACGCCTCAGGGATATGTCGAAACGCGGCTTGATGCCGTACGTTTCGTC
CCGCTACTTTCAGGAACGCA

Downstream 100 bases:

>100_bases
GCGATACCGGCGAGGGTCTGGAGGAAGAGTTCGAGGGGCAGCCCGATGAAACGGTCCTGCCTCCTGAGCCTGAACGCGTT
CTGCCGGAAATTGAACTGCT

Product: peptidoglycan-binding LysM:peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MIRIAAVILSTLLLAGCMSQQPVPAVDRSGTAQSRAASVAQPTGPGYYTVKRGDTLYRIALENGQDHRDIAAWNNIANPS
AIKEGQVLRVQPPGTSESVDGVTTKPIASGAVVEARSLDQPVGTSVSQPSGLKREPRVGKEPYSDEAYARLNKTGEPAKA
VEAKPETKPDVPAAAPAVASGPDDVPWLWPSSAKVSAPYSDSGNKGLDFAGKAGDPVLAAGDGKVVYAGSGLRGFGELVI
VKHNATYLSAYAHNRKILVKEGQQVSRGQKIAEMGNTDAESVKLHFEIRKQGKPVDPAQYLPKR

Sequences:

>Translated_304_residues
MIRIAAVILSTLLLAGCMSQQPVPAVDRSGTAQSRAASVAQPTGPGYYTVKRGDTLYRIALENGQDHRDIAAWNNIANPS
AIKEGQVLRVQPPGTSESVDGVTTKPIASGAVVEARSLDQPVGTSVSQPSGLKREPRVGKEPYSDEAYARLNKTGEPAKA
VEAKPETKPDVPAAAPAVASGPDDVPWLWPSSAKVSAPYSDSGNKGLDFAGKAGDPVLAAGDGKVVYAGSGLRGFGELVI
VKHNATYLSAYAHNRKILVKEGQQVSRGQKIAEMGNTDAESVKLHFEIRKQGKPVDPAQYLPKR
>Mature_304_residues
MIRIAAVILSTLLLAGCMSQQPVPAVDRSGTAQSRAASVAQPTGPGYYTVKRGDTLYRIALENGQDHRDIAAWNNIANPS
AIKEGQVLRVQPPGTSESVDGVTTKPIASGAVVEARSLDQPVGTSVSQPSGLKREPRVGKEPYSDEAYARLNKTGEPAKA
VEAKPETKPDVPAAAPAVASGPDDVPWLWPSSAKVSAPYSDSGNKGLDFAGKAGDPVLAAGDGKVVYAGSGLRGFGELVI
VKHNATYLSAYAHNRKILVKEGQQVSRGQKIAEMGNTDAESVKLHFEIRKQGKPVDPAQYLPKR

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=266, Percent_Identity=40.2255639097744, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI87082174, Length=171, Percent_Identity=45.0292397660819, Blast_Score=150, Evalue=7e-38,
Organism=Escherichia coli, GI87081989, Length=96, Percent_Identity=44.7916666666667, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082297, Length=100, Percent_Identity=38, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 32027; Mature: 32027

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRIAAVILSTLLLAGCMSQQPVPAVDRSGTAQSRAASVAQPTGPGYYTVKRGDTLYRIA
CEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCEEEEEE
LENGQDHRDIAAWNNIANPSAIKEGQVLRVQPPGTSESVDGVTTKPIASGAVVEARSLDQ
ECCCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEHHHCCC
PVGTSVSQPSGLKREPRVGKEPYSDEAYARLNKTGEPAKAVEAKPETKPDVPAAAPAVAS
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
GPDDVPWLWPSSAKVSAPYSDSGNKGLDFAGKAGDPVLAAGDGKVVYAGSGLRGFGELVI
CCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEE
VKHNATYLSAYAHNRKILVKEGQQVSRGQKIAEMGNTDAESVKLHFEIRKQGKPVDPAQY
EEECCEEEEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHH
LPKR
CCCC
>Mature Secondary Structure
MIRIAAVILSTLLLAGCMSQQPVPAVDRSGTAQSRAASVAQPTGPGYYTVKRGDTLYRIA
CEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCEEEEEE
LENGQDHRDIAAWNNIANPSAIKEGQVLRVQPPGTSESVDGVTTKPIASGAVVEARSLDQ
ECCCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEHHHCCC
PVGTSVSQPSGLKREPRVGKEPYSDEAYARLNKTGEPAKAVEAKPETKPDVPAAAPAVAS
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
GPDDVPWLWPSSAKVSAPYSDSGNKGLDFAGKAGDPVLAAGDGKVVYAGSGLRGFGELVI
CCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEE
VKHNATYLSAYAHNRKILVKEGQQVSRGQKIAEMGNTDAESVKLHFEIRKQGKPVDPAQY
EEECCEEEEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHH
LPKR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]