Click here to switch to the map view.

The map label for this gene is 71908088

Identifier: 71908088

GI number: 71908088

Start: 2670569

End: 2671222

Strand: Reverse

Name: 71908088

Synonym: Daro_2470

Alternate gene names: NA

Gene position: 2671222-2670569 (Counterclockwise)

Preceding gene: 71908091

Following gene: 71908087

Centisome position: 59.35

GC content: 61.47

Gene sequence:

>654_bases
TTGAGCGATGTGACGATGAGCCGCAGCCAGTTGGCGGCCAGCGAACTGCCGGTTTATACCGGGGTTTCCATTGCCCAGGT
CACACTGGTCAATAGCCAGGTGCTGGCGGCGCAGGTCTTGGCCGCGCTGCTGGCGGCGCCGGTGATCGGCTTCGATACCG
AATCGAAACCAACCTTCCTGAAAGGGGAGGTATCGACCGGCCCGCATCTGGTGCAACTGGCCACTGACGAGCATGTTTTC
CTGCTCCCGGTCGCATTTGCCGCAAACCATGAAGTGCTGAGGCGCATCCTTTCGGCAGCGGACATCCTCAAGGTCGGCCT
CGGGCTGGGCAATGACCGAAGCGTGCTGCGCTCCCGTCTGGGTATCGAATTGAACAATGTGCTCGACCTGGGCGAAGCGA
TGCGTGGCCCGGGGCATCGCGGCACGGTCGGCGCCAAGGTGGCGGTGGCCCACTATTTCGGCCAGAAATTCCAGAAATCG
AAGAAGGTGGGTACCAGCAATTGGGCCAATCCACGCTTGAACGAGCGCCAGTTGCTGTATGCCGCCAACGACGCCCACGT
CGCCTTGCAGCTCTACCATGCCTGGTTGCGTGACCCAAAGCACCGCGAACCGGGCGCCACCGCAATCAATCCACAGGAAA
CAACCCATGGCTGA

Upstream 100 bases:

>100_bases
TTGAGCCAGCGTGATCCCATACACTTGCATCTGTTCAAAAAGCGAAGGATACATGGATGCTGCCGCCAAGGTTGATGGGC
CGAAATCGAGGTGCTGACTT

Downstream 100 bases:

>100_bases
ATCAACGCCCAAGCTTTCTTTGCTTGAAACCCGCATTCTCGGCACCCTAGTCGAAAAGCAGCGGACGGTTCCCGATACCT
ACCCGTTGTCAGTCAATGCC

Product: 3'-5' exonuclease

Products: NA

Alternate protein names: Ribonuclease D; 3-5' Exonuclease Domain Protein; 3- 5' Exonuclease Domain Protein; 3 Exoribonuclease Family Protein; Exonuclease

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSDVTMSRSQLAASELPVYTGVSIAQVTLVNSQVLAAQVLAALLAAPVIGFDTESKPTFLKGEVSTGPHLVQLATDEHVF
LLPVAFAANHEVLRRILSAADILKVGLGLGNDRSVLRSRLGIELNNVLDLGEAMRGPGHRGTVGAKVAVAHYFGQKFQKS
KKVGTSNWANPRLNERQLLYAANDAHVALQLYHAWLRDPKHREPGATAINPQETTHG

Sequences:

>Translated_217_residues
MSDVTMSRSQLAASELPVYTGVSIAQVTLVNSQVLAAQVLAALLAAPVIGFDTESKPTFLKGEVSTGPHLVQLATDEHVF
LLPVAFAANHEVLRRILSAADILKVGLGLGNDRSVLRSRLGIELNNVLDLGEAMRGPGHRGTVGAKVAVAHYFGQKFQKS
KKVGTSNWANPRLNERQLLYAANDAHVALQLYHAWLRDPKHREPGATAINPQETTHG
>Mature_216_residues
SDVTMSRSQLAASELPVYTGVSIAQVTLVNSQVLAAQVLAALLAAPVIGFDTESKPTFLKGEVSTGPHLVQLATDEHVFL
LPVAFAANHEVLRRILSAADILKVGLGLGNDRSVLRSRLGIELNNVLDLGEAMRGPGHRGTVGAKVAVAHYFGQKFQKSK
KVGTSNWANPRLNERQLLYAANDAHVALQLYHAWLRDPKHREPGATAINPQETTHG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23351; Mature: 23220

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVTMSRSQLAASELPVYTGVSIAQVTLVNSQVLAAQVLAALLAAPVIGFDTESKPTFL
CCCCCCCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
KGEVSTGPHLVQLATDEHVFLLPVAFAANHEVLRRILSAADILKVGLGLGNDRSVLRSRL
ECCCCCCCEEEEEECCCEEEEEEEHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
GIELNNVLDLGEAMRGPGHRGTVGAKVAVAHYFGQKFQKSKKVGTSNWANPRLNERQLLY
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
AANDAHVALQLYHAWLRDPKHREPGATAINPQETTHG
EECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDVTMSRSQLAASELPVYTGVSIAQVTLVNSQVLAAQVLAALLAAPVIGFDTESKPTFL
CCCCCCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
KGEVSTGPHLVQLATDEHVFLLPVAFAANHEVLRRILSAADILKVGLGLGNDRSVLRSRL
ECCCCCCCEEEEEECCCEEEEEEEHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
GIELNNVLDLGEAMRGPGHRGTVGAKVAVAHYFGQKFQKSKKVGTSNWANPRLNERQLLY
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
AANDAHVALQLYHAWLRDPKHREPGATAINPQETTHG
EECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA