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The map label for this gene is rbfA

Identifier: 71908069

GI number: 71908069

Start: 2651370

End: 2651741

Strand: Reverse

Name: rbfA

Synonym: Daro_2451

Alternate gene names: 71908069

Gene position: 2651741-2651370 (Counterclockwise)

Preceding gene: 71908070

Following gene: 71908068

Centisome position: 58.91

GC content: 56.18

Gene sequence:

>372_bases
ATGAAGAAAAAGGGTTTTCAGCGCAGTGATCGGGTCGCGGAGCAAGTGCGCCGCGACCTTGCCGATCTGATTCGCACCGA
ACTCAAGGACCCGCGTGTCGGGATGATCAGCCTGACTGCCGTCGAGCTGACGCCGGACTACGCGCATGCAAAGGTTTTCT
TCGCAACCTTGAATTCGGAGCATCTGGAAGAAGTTGAACGTGGCCTGAAGCGGGCAGCGGGTTTCCTGCGCCGCGAGTTA
GGTAAGCGCATCCATATACATACCTTGCCGGAGCTGCATTTTGTATATGACAGTTCCATTGAGCGTGGTGCCAGCCTGTC
GCTGCTGATTGATCAGGCCAACGCACTTAGCGACCAGACGCCGGAAGAGTAA

Upstream 100 bases:

>100_bases
CGAACTTCGAGTGCGGTCTGTCGCTGCGTGGCAATAACGACATTCAGGTCGGCGATCAGCTCGAAGTGTACGAAATCCAG
GAAGTGGCGCGTTCCCTGTA

Downstream 100 bases:

>100_bases
TTCCCCAATGCAATTTAAAAGGGCCTGGAAACAGGTCGATGGCGTTCTCTTGCTCGACAAGCCGCTAGGGATGACCTCCA
ACGATGCTCTGCAAAAGGCA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKKKGFQRSDRVAEQVRRDLADLIRTELKDPRVGMISLTAVELTPDYAHAKVFFATLNSEHLEEVERGLKRAAGFLRREL
GKRIHIHTLPELHFVYDSSIERGASLSLLIDQANALSDQTPEE

Sequences:

>Translated_123_residues
MKKKGFQRSDRVAEQVRRDLADLIRTELKDPRVGMISLTAVELTPDYAHAKVFFATLNSEHLEEVERGLKRAAGFLRREL
GKRIHIHTLPELHFVYDSSIERGASLSLLIDQANALSDQTPEE
>Mature_123_residues
MKKKGFQRSDRVAEQVRRDLADLIRTELKDPRVGMISLTAVELTPDYAHAKVFFATLNSEHLEEVERGLKRAAGFLRREL
GKRIHIHTLPELHFVYDSSIERGASLSLLIDQANALSDQTPEE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=111, Percent_Identity=38.7387387387387, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_DECAR (Q47D95)

Other databases:

- EMBL:   CP000089
- RefSeq:   YP_285656.1
- ProteinModelPortal:   Q47D95
- SMR:   Q47D95
- STRING:   Q47D95
- GeneID:   3568224
- GenomeReviews:   CP000089_GR
- KEGG:   dar:Daro_2451
- NMPDR:   fig|159087.4.peg.2426
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- BioCyc:   DARO159087:DARO_2451-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14010; Mature: 14010

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKGFQRSDRVAEQVRRDLADLIRTELKDPRVGMISLTAVELTPDYAHAKVFFATLNSE
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHEEEECCHH
HLEEVERGLKRAAGFLRRELGKRIHIHTLPELHFVYDSSIERGASLSLLIDQANALSDQT
HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCCCCCCCEEEEEECHHHCCCCC
PEE
CCC
>Mature Secondary Structure
MKKKGFQRSDRVAEQVRRDLADLIRTELKDPRVGMISLTAVELTPDYAHAKVFFATLNSE
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHEEEECCHH
HLEEVERGLKRAAGFLRRELGKRIHIHTLPELHFVYDSSIERGASLSLLIDQANALSDQT
HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCCCCCCCEEEEEECHHHCCCCC
PEE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA