| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is 71908042
Identifier: 71908042
GI number: 71908042
Start: 2617085
End: 2618578
Strand: Reverse
Name: 71908042
Synonym: Daro_2423
Alternate gene names: NA
Gene position: 2618578-2617085 (Counterclockwise)
Preceding gene: 71908045
Following gene: 71908040
Centisome position: 58.18
GC content: 49.4
Gene sequence:
>1494_bases ATGAAAGTTTCTCGTTTAGCTGACCGCAATAAATCCATGAAAAATTCATCCTGGATAGGAAAGAGGGCGAGAAAGGCGGC ATCCCTCTCTCTGGTAATGATTTGCTTGAACAGTACTTCAGCTACTGCAGCGGTCGATCTGAGCTATCTTCAAGGGTTAC TGGCTTCAACTCCTGAAGGTGGCTGGGTTCAGGTTAATACCAACAAGTTTTCCGATGCGTGGGCCTCGACTCAAGCCGGA GGTGTTCCAGGCTCGGATCCAGCAGCCATAGTCCATGCTTGGAGTTCCGTTGCATGGGATTCTACCCGTGGTGACCTGCT TCTATTTGGGGGGGGGCACGCTAACTACGCAGGTAATGAAATGTACGTTTGGCAGGGGTCTGATGGCGCCTGGACCCGAG GTTCCCTGCCTAGTCGAATGGAAAGATATGGTTCAACGGCCACGTTCTTCACCGTAGATAATGCTGCTCCGCAGTCTGCG CATACGTATGACAACAATATATATGTGCCAATAAACGACATGTTTGTCACGTTTGGCGGTGCAGCCTACAATTCTGGTGC TGGCTTCGTCGTTAAAGGGCCTGATGGCAATCCTCTGCCTGCAGGTCCTTGGATGTGGGATCCACAAAAAGCTGATCCGA ATAAGGTTGGAGGAACGGATGGCTCTGGATACCTCCCATCGACGCTTGGCGGAATGATGTGGAGCAACCAATACGGCAAG TGGGTCGGAGACCCTGGCTCAACGTATTTGGAAGGTTCTACTGCCTATCGCCAAGAGAATGGTCATGATGTTATTTACGT AACCGGCGCAGGTGGTGGTGGTTGGCCTTCCTTGTTCAGGTATGAGTTAGGCAACGTTCGGGCCGGTGAACTTGGAAGTT TTGAGAAGGTTGCTGTTGCATGGAATGCTCCAAGCTTCCAAGGAACATCCACAATTGCAAATAACCTCTTTATAAGAACG TCGAGCGTACCAGGATTTCAAATGGGTTTTGGCGTATGGGATCTTTCCAAGTCCAATGCGAGCAATCCAGATGGCAATCG TGATATCGCCATCTATCTTGTGAATGAAGACGGAACCCCTTTCATGATGAACGTTGATTACGGCATCGATTTTGATAGCG TCAACGGAAAGATTCTGATGTGGGATGGCCGTGATAAAGGGACAGTCTGGGAAACCGAGGCGGTATACGACAGTTTGGGA AATTTGGTTACGACGTGGGTTGTGAAAAAGCGCGTGAGTTCCACTGTGCAGCAACCTACCGGAAATTTTCAAACAGGGGT GCTCGGAAAGTGGGATTTCGTTGAGCAATTAGGCGCATTTATAGCGCTGGATGAGTTTACTTCGGCTACGCAAGATGCCG GGGTCTGGCTATATAAACCATTTTCCGATGTCCAAGAACCTCCTTCGGGAGACTTGCCTGAGCCGGCCACACTAGCATTG AATATTTTTGCATTGCTGATACTGTTTTGGCGGTTTAGATTGAAGTTGGGCTAA
Upstream 100 bases:
>100_bases TGTTAATAAATTCAATTGCTTGCAGAATGAATTTTTCTGTGGATTGATTTTTGCTTTAAGAATCAAATACATTTTGGTTC GGAAAGAATTGGAGCGCATG
Downstream 100 bases:
>100_bases AGACGGGGGAGAGCGGGCTTAATGTTCCATAGGTTCTTGAATTTCGTTTTCTCTTTCTGATTTAATCGGCTCAGAAATAT GTTGGTCTGGGGGAGAGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 497; Mature: 497
Protein sequence:
>497_residues MKVSRLADRNKSMKNSSWIGKRARKAASLSLVMICLNSTSATAAVDLSYLQGLLASTPEGGWVQVNTNKFSDAWASTQAG GVPGSDPAAIVHAWSSVAWDSTRGDLLLFGGGHANYAGNEMYVWQGSDGAWTRGSLPSRMERYGSTATFFTVDNAAPQSA HTYDNNIYVPINDMFVTFGGAAYNSGAGFVVKGPDGNPLPAGPWMWDPQKADPNKVGGTDGSGYLPSTLGGMMWSNQYGK WVGDPGSTYLEGSTAYRQENGHDVIYVTGAGGGGWPSLFRYELGNVRAGELGSFEKVAVAWNAPSFQGTSTIANNLFIRT SSVPGFQMGFGVWDLSKSNASNPDGNRDIAIYLVNEDGTPFMMNVDYGIDFDSVNGKILMWDGRDKGTVWETEAVYDSLG NLVTTWVVKKRVSSTVQQPTGNFQTGVLGKWDFVEQLGAFIALDEFTSATQDAGVWLYKPFSDVQEPPSGDLPEPATLAL NIFALLILFWRFRLKLG
Sequences:
>Translated_497_residues MKVSRLADRNKSMKNSSWIGKRARKAASLSLVMICLNSTSATAAVDLSYLQGLLASTPEGGWVQVNTNKFSDAWASTQAG GVPGSDPAAIVHAWSSVAWDSTRGDLLLFGGGHANYAGNEMYVWQGSDGAWTRGSLPSRMERYGSTATFFTVDNAAPQSA HTYDNNIYVPINDMFVTFGGAAYNSGAGFVVKGPDGNPLPAGPWMWDPQKADPNKVGGTDGSGYLPSTLGGMMWSNQYGK WVGDPGSTYLEGSTAYRQENGHDVIYVTGAGGGGWPSLFRYELGNVRAGELGSFEKVAVAWNAPSFQGTSTIANNLFIRT SSVPGFQMGFGVWDLSKSNASNPDGNRDIAIYLVNEDGTPFMMNVDYGIDFDSVNGKILMWDGRDKGTVWETEAVYDSLG NLVTTWVVKKRVSSTVQQPTGNFQTGVLGKWDFVEQLGAFIALDEFTSATQDAGVWLYKPFSDVQEPPSGDLPEPATLAL NIFALLILFWRFRLKLG >Mature_497_residues MKVSRLADRNKSMKNSSWIGKRARKAASLSLVMICLNSTSATAAVDLSYLQGLLASTPEGGWVQVNTNKFSDAWASTQAG GVPGSDPAAIVHAWSSVAWDSTRGDLLLFGGGHANYAGNEMYVWQGSDGAWTRGSLPSRMERYGSTATFFTVDNAAPQSA HTYDNNIYVPINDMFVTFGGAAYNSGAGFVVKGPDGNPLPAGPWMWDPQKADPNKVGGTDGSGYLPSTLGGMMWSNQYGK WVGDPGSTYLEGSTAYRQENGHDVIYVTGAGGGGWPSLFRYELGNVRAGELGSFEKVAVAWNAPSFQGTSTIANNLFIRT SSVPGFQMGFGVWDLSKSNASNPDGNRDIAIYLVNEDGTPFMMNVDYGIDFDSVNGKILMWDGRDKGTVWETEAVYDSLG NLVTTWVVKKRVSSTVQQPTGNFQTGVLGKWDFVEQLGAFIALDEFTSATQDAGVWLYKPFSDVQEPPSGDLPEPATLAL NIFALLILFWRFRLKLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53622; Mature: 53622
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVSRLADRNKSMKNSSWIGKRARKAASLSLVMICLNSTSATAAVDLSYLQGLLASTPEG CCCHHHHHCCCCCCCCHHHHHHHHHHHCEEEEEEEECCCCCHHEEEHHHHHHHHHCCCCC GWVQVNTNKFSDAWASTQAGGVPGSDPAAIVHAWSSVAWDSTRGDLLLFGGGHANYAGNE CEEEEECCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE MYVWQGSDGAWTRGSLPSRMERYGSTATFFTVDNAAPQSAHTYDNNIYVPINDMFVTFGG EEEEECCCCCCCCCCCHHHHHHHCCEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEECC AAYNSGAGFVVKGPDGNPLPAGPWMWDPQKADPNKVGGTDGSGYLPSTLGGMMWSNQYGK CEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC WVGDPGSTYLEGSTAYRQENGHDVIYVTGAGGGGWPSLFRYELGNVRAGELGSFEKVAVA EECCCCCCEECCCHHEECCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEE WNAPSFQGTSTIANNLFIRTSSVPGFQMGFGVWDLSKSNASNPDGNRDIAIYLVNEDGTP ECCCCCCCCHHHHCEEEEEECCCCCEECCCEEEECCCCCCCCCCCCCEEEEEEECCCCCE FMMNVDYGIDFDSVNGKILMWDGRDKGTVWETEAVYDSLGNLVTTWVVKKRVSSTVQQPT EEEEECCCCEECCCCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GNFQTGVLGKWDFVEQLGAFIALDEFTSATQDAGVWLYKPFSDVQEPPSGDLPEPATLAL CCCCCCCCCCHHHHHHHHHEEEEHHHHCCCCCCCEEEECCHHHHCCCCCCCCCCCHHHHH NIFALLILFWRFRLKLG HHHHHHHHHHHHHHCCC >Mature Secondary Structure MKVSRLADRNKSMKNSSWIGKRARKAASLSLVMICLNSTSATAAVDLSYLQGLLASTPEG CCCHHHHHCCCCCCCCHHHHHHHHHHHCEEEEEEEECCCCCHHEEEHHHHHHHHHCCCCC GWVQVNTNKFSDAWASTQAGGVPGSDPAAIVHAWSSVAWDSTRGDLLLFGGGHANYAGNE CEEEEECCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE MYVWQGSDGAWTRGSLPSRMERYGSTATFFTVDNAAPQSAHTYDNNIYVPINDMFVTFGG EEEEECCCCCCCCCCCHHHHHHHCCEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEECC AAYNSGAGFVVKGPDGNPLPAGPWMWDPQKADPNKVGGTDGSGYLPSTLGGMMWSNQYGK CEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC WVGDPGSTYLEGSTAYRQENGHDVIYVTGAGGGGWPSLFRYELGNVRAGELGSFEKVAVA EECCCCCCEECCCHHEECCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEE WNAPSFQGTSTIANNLFIRTSSVPGFQMGFGVWDLSKSNASNPDGNRDIAIYLVNEDGTP ECCCCCCCCHHHHCEEEEEECCCCCEECCCEEEECCCCCCCCCCCCCEEEEEEECCCCCE FMMNVDYGIDFDSVNGKILMWDGRDKGTVWETEAVYDSLGNLVTTWVVKKRVSSTVQQPT EEEEECCCCEECCCCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GNFQTGVLGKWDFVEQLGAFIALDEFTSATQDAGVWLYKPFSDVQEPPSGDLPEPATLAL CCCCCCCCCCHHHHHHHHHEEEEHHHHCCCCCCCEEEECCHHHHCCCCCCCCCCCHHHHH NIFALLILFWRFRLKLG HHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA