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The map label for this gene is yubM [H]

Identifier: 71907841

GI number: 71907841

Start: 2396351

End: 2398354

Strand: Reverse

Name: yubM [H]

Synonym: Daro_2219

Alternate gene names: 71907841

Gene position: 2398354-2396351 (Counterclockwise)

Preceding gene: 71907845

Following gene: 71907839

Centisome position: 53.28

GC content: 65.62

Gene sequence:

>2004_bases
ATGAAATTCACCAAAGCCGAAATCGACGCCATCGTCGAAGCGTCGCCCCGTACCTTCGTCCCCTTCAACAAGCTGGTCCT
CTCGCAGGACTATCAGGCGCGCGCCGGTGGCACTCCGAAGTTGAGCATCGCCGAACTCGCGGCCTCGATCAAGGAATGCG
GCGTATTGCAGAACCTCATCGTCGTGCAGGGCGCACGTGGCCGCTACGAGGTCTGCGCGGGTGGTCGCCGGCTCGAAGCG
CTGACCCTGCTGGTGGGCAAGGGCGACCTCGCCGACAACTACCCCGTGCCCGTGTTGGTCGTGCCGGCCGACCGGGCGCT
GATCGCCAGCCTGTCGGAGAACTGCTTCCACATCCCCATGCATCCCGCCGACGAGTTCGCGGCCTTCGCCAAGCTGATCG
GGCAAGGCAAGTCGGTCGAGGACGTGGCCGCTGCCTTCGGCATCACCCCGTTGGTGGTCAAGCGCCGCATGAAGCTCGCC
ACCGTCTCGCCCAAGCTGATGGCCCTTTTTCGCGAAGCCCAGATCGGGCTGGACTGCCTGATGGTGCTGGCCTCGGTGGA
CGATCACCAGAAGCAGGAGCAGACCTGGGCCGCGCTGCCGTCATGGAACCGCCGTTCTGACTACCTTCGCCAACTGCTGA
CCCAGGGCGAGATCGAGTCCGACCGCGATGCCGTCGCCAAGTATGTCACCCTCAAGGCCTATGAGAAGGCCGGCGGTGCG
CTACGGCGCGACCTCTTCAGCGACGACGACAAGATGGCCTACCTGCTCGATGCGGCCCTCCTGGAAAAACTGGCGACCGA
CAAGCTGCAAAAGCGCGCCAAGCAGATCGCGGCCGAAGGCTGGAAATGGGTTGATGTCCGAGTCCGCTATGCCTTCGACG
AGTACGTCAAGTACGGCGAACTGCGCAAGACGAAGCGCCAACCGGATGCCGAGGAAGCAGCCGCCCTGGAGGACCTGGAT
GGTCGCATCGCGGCGCTGCACGCGCAGATGGAAACGCTGGCCGACGAAGACGGCGACGAGGAGACCTTCTATCAGCTCGA
AGGCGAAGCCGAAGGCCTGAAGGAACAACGCAAGGCGCTCGACGAGGCCCTCAGCGTGTGGCCGGCCGACCTGATTGCCC
AGGCCGGCTGCGTCGTCCATGTCGGCAATAACGGCACCGCTGCGGTGAAGTATGGCCTGATCCGCCCCGAAGATCGCAAT
GACATGGTCCAGGCCGCCCGCCAAGCCGCCGAAAACGGCACCGACGAACCGCTGGTGTCGCTGCCGTCGCCCAAGACCCG
CCCGGTGCATTCCGAGAAGCTGGTGCGTTGTCTCTCCGCCCACCGGGTCGCCGCCGTCCAGGCCGAATTGCTCGACCGCC
CCGATGTGGCGCTGGCCGCGATCACCGCGCATCTGGCGCAAAAGATTTTCCGGGGGAACGATCTCTACTATTGCCGTTCG
GAGAACGTCTTCGCCATCAGCGCGACCGACAGCCAAGCCGAACTGCGATCCGCCGCCGAGGACATGGTGGCCAGTGCCGC
CTGGGCGAAGCTTCAGGCCGAGCGCACCGCCTGGGCCGAGCGGCTGCCGGAGAACCTGGAGGACATCTTCCCGTGGGTGC
TCGCCCAGGAGCAGGCGACGGTGCTGCACCTGCTGACCTTCGTCGTTGCGGTCACCGTCACCGGTATCTATGGCACCGAA
CCCGAGCGGCAAAGCAACGAGGCGTTAGCCCGGGCCTTGGGGTTGGACATGAGCCAGTGGTGGACGGCCACGGGGGTTTC
CTACTTCAACCACGTCTCCAAGGCACGTGTCCTCGAGGTCGTCACCGAGGCCGTTGATGCCAATGCCGCCAGCCCGCTGG
CCGCGCTCAAAAAGGATGCCGTGGTGACGGGGGCGGAACAGACGGTGGCCGGCACGGGCTGGTTGCCATCCTGCCTGCGC
ATCAACACCGCCCAGACCAGGCAGACCGAAGCGGCAACGGACGACACGCGCAAGGTGCCCGCCGAGCCCGCCCTGACGGC
GTGA

Upstream 100 bases:

>100_bases
AGCGACGCCCGGAGGCTTGAATGACGGGGTTGGGGTGAGATTCTGGACTCATGGACATGCCCCTCGGCATGCCTCCTTCA
ACCGTTCAGGAGCCCTCCGC

Downstream 100 bases:

>100_bases
GGAACGCCGCAAGGCGATGCCGGGCGGCGCAATCGTTCCCGCCCGGCACCGCCTTGTCCGGACGCCGCTCACACCGGCAC
GGCCGCCCCGTCGTCATCGT

Product: ParB-like nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 667; Mature: 667

Protein sequence:

>667_residues
MKFTKAEIDAIVEASPRTFVPFNKLVLSQDYQARAGGTPKLSIAELAASIKECGVLQNLIVVQGARGRYEVCAGGRRLEA
LTLLVGKGDLADNYPVPVLVVPADRALIASLSENCFHIPMHPADEFAAFAKLIGQGKSVEDVAAAFGITPLVVKRRMKLA
TVSPKLMALFREAQIGLDCLMVLASVDDHQKQEQTWAALPSWNRRSDYLRQLLTQGEIESDRDAVAKYVTLKAYEKAGGA
LRRDLFSDDDKMAYLLDAALLEKLATDKLQKRAKQIAAEGWKWVDVRVRYAFDEYVKYGELRKTKRQPDAEEAAALEDLD
GRIAALHAQMETLADEDGDEETFYQLEGEAEGLKEQRKALDEALSVWPADLIAQAGCVVHVGNNGTAAVKYGLIRPEDRN
DMVQAARQAAENGTDEPLVSLPSPKTRPVHSEKLVRCLSAHRVAAVQAELLDRPDVALAAITAHLAQKIFRGNDLYYCRS
ENVFAISATDSQAELRSAAEDMVASAAWAKLQAERTAWAERLPENLEDIFPWVLAQEQATVLHLLTFVVAVTVTGIYGTE
PERQSNEALARALGLDMSQWWTATGVSYFNHVSKARVLEVVTEAVDANAASPLAALKKDAVVTGAEQTVAGTGWLPSCLR
INTAQTRQTEAATDDTRKVPAEPALTA

Sequences:

>Translated_667_residues
MKFTKAEIDAIVEASPRTFVPFNKLVLSQDYQARAGGTPKLSIAELAASIKECGVLQNLIVVQGARGRYEVCAGGRRLEA
LTLLVGKGDLADNYPVPVLVVPADRALIASLSENCFHIPMHPADEFAAFAKLIGQGKSVEDVAAAFGITPLVVKRRMKLA
TVSPKLMALFREAQIGLDCLMVLASVDDHQKQEQTWAALPSWNRRSDYLRQLLTQGEIESDRDAVAKYVTLKAYEKAGGA
LRRDLFSDDDKMAYLLDAALLEKLATDKLQKRAKQIAAEGWKWVDVRVRYAFDEYVKYGELRKTKRQPDAEEAAALEDLD
GRIAALHAQMETLADEDGDEETFYQLEGEAEGLKEQRKALDEALSVWPADLIAQAGCVVHVGNNGTAAVKYGLIRPEDRN
DMVQAARQAAENGTDEPLVSLPSPKTRPVHSEKLVRCLSAHRVAAVQAELLDRPDVALAAITAHLAQKIFRGNDLYYCRS
ENVFAISATDSQAELRSAAEDMVASAAWAKLQAERTAWAERLPENLEDIFPWVLAQEQATVLHLLTFVVAVTVTGIYGTE
PERQSNEALARALGLDMSQWWTATGVSYFNHVSKARVLEVVTEAVDANAASPLAALKKDAVVTGAEQTVAGTGWLPSCLR
INTAQTRQTEAATDDTRKVPAEPALTA
>Mature_667_residues
MKFTKAEIDAIVEASPRTFVPFNKLVLSQDYQARAGGTPKLSIAELAASIKECGVLQNLIVVQGARGRYEVCAGGRRLEA
LTLLVGKGDLADNYPVPVLVVPADRALIASLSENCFHIPMHPADEFAAFAKLIGQGKSVEDVAAAFGITPLVVKRRMKLA
TVSPKLMALFREAQIGLDCLMVLASVDDHQKQEQTWAALPSWNRRSDYLRQLLTQGEIESDRDAVAKYVTLKAYEKAGGA
LRRDLFSDDDKMAYLLDAALLEKLATDKLQKRAKQIAAEGWKWVDVRVRYAFDEYVKYGELRKTKRQPDAEEAAALEDLD
GRIAALHAQMETLADEDGDEETFYQLEGEAEGLKEQRKALDEALSVWPADLIAQAGCVVHVGNNGTAAVKYGLIRPEDRN
DMVQAARQAAENGTDEPLVSLPSPKTRPVHSEKLVRCLSAHRVAAVQAELLDRPDVALAAITAHLAQKIFRGNDLYYCRS
ENVFAISATDSQAELRSAAEDMVASAAWAKLQAERTAWAERLPENLEDIFPWVLAQEQATVLHLLTFVVAVTVTGIYGTE
PERQSNEALARALGLDMSQWWTATGVSYFNHVSKARVLEVVTEAVDANAASPLAALKKDAVVTGAEQTVAGTGWLPSCLR
INTAQTRQTEAATDDTRKVPAEPALTA

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 72888; Mature: 72888

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFTKAEIDAIVEASPRTFVPFNKLVLSQDYQARAGGTPKLSIAELAASIKECGVLQNLI
CCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
VVQGARGRYEVCAGGRRLEALTLLVGKGDLADNYPVPVLVVPADRALIASLSENCFHIPM
HEECCCCCCHHHCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCHHHHHHHCCCCEECCC
HPADEFAAFAKLIGQGKSVEDVAAAFGITPLVVKRRMKLATVSPKLMALFREAQIGLDCL
CCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
MVLASVDDHQKQEQTWAALPSWNRRSDYLRQLLTQGEIESDRDAVAKYVTLKAYEKAGGA
HHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHH
LRRDLFSDDDKMAYLLDAALLEKLATDKLQKRAKQIAAEGWKWVDVRVRYAFDEYVKYGE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHH
LRKTKRQPDAEEAAALEDLDGRIAALHAQMETLADEDGDEETFYQLEGEAEGLKEQRKAL
HHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHH
DEALSVWPADLIAQAGCVVHVGNNGTAAVKYGLIRPEDRNDMVQAARQAAENGTDEPLVS
HHHHHHCCHHHHHCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEE
LPSPKTRPVHSEKLVRCLSAHRVAAVQAELLDRPDVALAAITAHLAQKIFRGNDLYYCRS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
ENVFAISATDSQAELRSAAEDMVASAAWAKLQAERTAWAERLPENLEDIFPWVLAQEQAT
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
VLHLLTFVVAVTVTGIYGTEPERQSNEALARALGLDMSQWWTATGVSYFNHVSKARVLEV
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
VTEAVDANAASPLAALKKDAVVTGAEQTVAGTGWLPSCLRINTAQTRQTEAATDDTRKVP
HHHHHCCCCCCHHHHHHHCCEEECCCHHCCCCCCCCHHHEECCHHHCCCCCCCCCCCCCC
AEPALTA
CCCCCCC
>Mature Secondary Structure
MKFTKAEIDAIVEASPRTFVPFNKLVLSQDYQARAGGTPKLSIAELAASIKECGVLQNLI
CCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
VVQGARGRYEVCAGGRRLEALTLLVGKGDLADNYPVPVLVVPADRALIASLSENCFHIPM
HEECCCCCCHHHCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCHHHHHHHCCCCEECCC
HPADEFAAFAKLIGQGKSVEDVAAAFGITPLVVKRRMKLATVSPKLMALFREAQIGLDCL
CCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
MVLASVDDHQKQEQTWAALPSWNRRSDYLRQLLTQGEIESDRDAVAKYVTLKAYEKAGGA
HHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHH
LRRDLFSDDDKMAYLLDAALLEKLATDKLQKRAKQIAAEGWKWVDVRVRYAFDEYVKYGE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHH
LRKTKRQPDAEEAAALEDLDGRIAALHAQMETLADEDGDEETFYQLEGEAEGLKEQRKAL
HHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHH
DEALSVWPADLIAQAGCVVHVGNNGTAAVKYGLIRPEDRNDMVQAARQAAENGTDEPLVS
HHHHHHCCHHHHHCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEE
LPSPKTRPVHSEKLVRCLSAHRVAAVQAELLDRPDVALAAITAHLAQKIFRGNDLYYCRS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
ENVFAISATDSQAELRSAAEDMVASAAWAKLQAERTAWAERLPENLEDIFPWVLAQEQAT
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
VLHLLTFVVAVTVTGIYGTEPERQSNEALARALGLDMSQWWTATGVSYFNHVSKARVLEV
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
VTEAVDANAASPLAALKKDAVVTGAEQTVAGTGWLPSCLRINTAQTRQTEAATDDTRKVP
HHHHHCCCCCCHHHHHHHCCEEECCCHHCCCCCCCCHHHEECCHHHCCCCCCCCCCCCCC
AEPALTA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]