Definition Dechloromonas aromatica RCB, complete genome.
Accession NC_007298
Length 4,501,104

Click here to switch to the map view.

The map label for this gene is ttuD [H]

Identifier: 71907744

GI number: 71907744

Start: 2288484

End: 2289764

Strand: Reverse

Name: ttuD [H]

Synonym: Daro_2118

Alternate gene names: 71907744

Gene position: 2289764-2288484 (Counterclockwise)

Preceding gene: 71907745

Following gene: 71907743

Centisome position: 50.87

GC content: 63.15

Gene sequence:

>1281_bases
ATGACCACTCCCATCCAGCCGCGCCATTTGCTGCAGCAGATGTTCCACGCCGCCATCGAGGCCGCCCAGTCGACACATTG
CATTCCGCCATACCTTCCAGAAGTACCTAACGGCCGCCTGATTGTCATCGGTGCCGGCAAGGCTTCGGCGGCGATGGCCC
AGGCCGTCGAGGACAACTGGCCCGGCGAACTTTCCGGCCTGGTCGTCACCCGCTACGGCTATGGCGTTCCCTGCAAGCGC
ATCGAAATCGTCGAAGCCGCCCATCCGGTGCCCGATGCCGCCGGGCTCGCCGCCGCCGGTCGCATTCGCGATCTGGTCAG
CGACCTTACCGCCGACGACACGGTGCTCTGCCTGATCTCAGGCGGAGGTTCGGCGCTGCTTGCCTTGCCGCTCGCCGGCA
TCACGCTTGAAGACAAGCAGGCAGTCAGTCGCGCCCTGCTCAAGTCGGGGGCCAGCATCAGCGAAATGAATTGCGTGCGC
CGTCATCTGTCGGCGATCAAGGGCGGTCGCCTGGCTGCTGCCTGCCATCCTGCCCGAGTGGTCACGCTGCTGATTTCCGA
CGTACCCGGCGACAATCCCTGCGACATCGCCTCCGGTCCCACCGTCGCCGACGCAACCACCTGCGCTGATGCGTTAGCCA
TCGTCCGCCGCTATGGCATCGACCTGCCGCCGCATGTCCGGGAAATTCTCGAAAGCGGCGAGGGCGAATCCATCAAGCCG
GACGATCCCGTGCTGAGCAGGATCGAAACTCACATGATTGCCACACCCCAGATGGCGCTCGAAGCTGCCGCCAAAGTCGC
TGCTGCTCATGGCTACCCAGCTCACATTCTGGGAGACAGCATCGAAGGCGAAGCTGCCGATGTTGGCAAGGTCATGGCCG
GCATGGCTTTGCAGGTTTCCCGTCATGGCCAACCGTTCAAAGCCCCCTGCATCCTGCTCTCCGGTGGAGAAACCACAGTT
ACCGTCAGCGGCAGTGGGCGGGGCGGGCGCAATGTCGAGTTTCTTTTGTCACTCGGCGTGGCTCTCGAAGGCCGGGCCGG
CATCCATGCCCTGGCCGGTGATACCGATGGTGTCGATGGACAGGAGGAGATTGCCGGCGCCTATCTCGCGCCCCACTCGC
TACAACGCGCCTGGGGCTTGGGCATCCGTCCCAAGGATAGCCTCGACAACAACGATGGGCATTCCTTCTTCAGTGCCTTG
GGCGACTCGATCATTACTGGCCCGACGCTGACCAACCTCAATGACTTTCGCGCCATTTTCATTACCGGCGAGACGGCTTG
A

Upstream 100 bases:

>100_bases
GGCCAAAATCGTCAATCGCTAACCCGGTGAATTGCGGCTTGGGCGACCTGCCTCGCCCAAGCCGCATGACGAAGTCACAC
CCACTCCGAGGATTTCAGAC

Downstream 100 bases:

>100_bases
GTCGCTCGCTTGAAAGGACACTGAACATGCACCGTAACCGTAATGCCAAAATTGTCGCCACCCTCGGCCCAGCCAGTTCT
GATCGCGACACGATCCAGAA

Product: glycerate 2-kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MTTPIQPRHLLQQMFHAAIEAAQSTHCIPPYLPEVPNGRLIVIGAGKASAAMAQAVEDNWPGELSGLVVTRYGYGVPCKR
IEIVEAAHPVPDAAGLAAAGRIRDLVSDLTADDTVLCLISGGGSALLALPLAGITLEDKQAVSRALLKSGASISEMNCVR
RHLSAIKGGRLAAACHPARVVTLLISDVPGDNPCDIASGPTVADATTCADALAIVRRYGIDLPPHVREILESGEGESIKP
DDPVLSRIETHMIATPQMALEAAAKVAAAHGYPAHILGDSIEGEAADVGKVMAGMALQVSRHGQPFKAPCILLSGGETTV
TVSGSGRGGRNVEFLLSLGVALEGRAGIHALAGDTDGVDGQEEIAGAYLAPHSLQRAWGLGIRPKDSLDNNDGHSFFSAL
GDSIITGPTLTNLNDFRAIFITGETA

Sequences:

>Translated_426_residues
MTTPIQPRHLLQQMFHAAIEAAQSTHCIPPYLPEVPNGRLIVIGAGKASAAMAQAVEDNWPGELSGLVVTRYGYGVPCKR
IEIVEAAHPVPDAAGLAAAGRIRDLVSDLTADDTVLCLISGGGSALLALPLAGITLEDKQAVSRALLKSGASISEMNCVR
RHLSAIKGGRLAAACHPARVVTLLISDVPGDNPCDIASGPTVADATTCADALAIVRRYGIDLPPHVREILESGEGESIKP
DDPVLSRIETHMIATPQMALEAAAKVAAAHGYPAHILGDSIEGEAADVGKVMAGMALQVSRHGQPFKAPCILLSGGETTV
TVSGSGRGGRNVEFLLSLGVALEGRAGIHALAGDTDGVDGQEEIAGAYLAPHSLQRAWGLGIRPKDSLDNNDGHSFFSAL
GDSIITGPTLTNLNDFRAIFITGETA
>Mature_425_residues
TTPIQPRHLLQQMFHAAIEAAQSTHCIPPYLPEVPNGRLIVIGAGKASAAMAQAVEDNWPGELSGLVVTRYGYGVPCKRI
EIVEAAHPVPDAAGLAAAGRIRDLVSDLTADDTVLCLISGGGSALLALPLAGITLEDKQAVSRALLKSGASISEMNCVRR
HLSAIKGGRLAAACHPARVVTLLISDVPGDNPCDIASGPTVADATTCADALAIVRRYGIDLPPHVREILESGEGESIKPD
DPVLSRIETHMIATPQMALEAAAKVAAAHGYPAHILGDSIEGEAADVGKVMAGMALQVSRHGQPFKAPCILLSGGETTVT
VSGSGRGGRNVEFLLSLGVALEGRAGIHALAGDTDGVDGQEEIAGAYLAPHSLQRAWGLGIRPKDSLDNNDGHSFFSALG
DSIITGPTLTNLNDFRAIFITGETA

Specific function: Degrades an unidentified toxic product from the first step of tartrate degradation [H]

COG id: COG2379

COG function: function code G; Putative glycerate kinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI31543063, Length=442, Percent_Identity=35.5203619909502, Blast_Score=197, Evalue=1e-50,
Organism=Caenorhabditis elegans, GI193205461, Length=448, Percent_Identity=31.9196428571429, Blast_Score=173, Evalue=2e-43,
Organism=Drosophila melanogaster, GI19920578, Length=436, Percent_Identity=30.7339449541284, Blast_Score=149, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007835 [H]

Pfam domain/function: PF05161 MOFRL [H]

EC number: =1.1.1.81 [H]

Molecular weight: Translated: 44093; Mature: 43962

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPIQPRHLLQQMFHAAIEAAQSTHCIPPYLPEVPNGRLIVIGAGKASAAMAQAVEDNW
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCC
PGELSGLVVTRYGYGVPCKRIEIVEAAHPVPDAAGLAAAGRIRDLVSDLTADDTVLCLIS
CCCCCCEEEEECCCCCCCCCEEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
GGGSALLALPLAGITLEDKQAVSRALLKSGASISEMNCVRRHLSAIKGGRLAAACHPARV
CCCCEEEEEECCCCEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCHHHE
VTLLISDVPGDNPCDIASGPTVADATTCADALAIVRRYGIDLPPHVREILESGEGESIKP
EEEHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC
DDPVLSRIETHMIATPQMALEAAAKVAAAHGYPAHILGDSIEGEAADVGKVMAGMALQVS
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
RHGQPFKAPCILLSGGETTVTVSGSGRGGRNVEFLLSLGVALEGRAGIHALAGDTDGVDG
CCCCCCCCCEEEEECCCEEEEEECCCCCCCCHHEEEECCCEECCCCCEEEECCCCCCCCC
QEEIAGAYLAPHSLQRAWGLGIRPKDSLDNNDGHSFFSALGDSIITGPTLTNLNDFRAIF
HHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHCCCCCCCCCCCCEEEE
ITGETA
EECCCC
>Mature Secondary Structure 
TTPIQPRHLLQQMFHAAIEAAQSTHCIPPYLPEVPNGRLIVIGAGKASAAMAQAVEDNW
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCC
PGELSGLVVTRYGYGVPCKRIEIVEAAHPVPDAAGLAAAGRIRDLVSDLTADDTVLCLIS
CCCCCCEEEEECCCCCCCCCEEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
GGGSALLALPLAGITLEDKQAVSRALLKSGASISEMNCVRRHLSAIKGGRLAAACHPARV
CCCCEEEEEECCCCEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCHHHE
VTLLISDVPGDNPCDIASGPTVADATTCADALAIVRRYGIDLPPHVREILESGEGESIKP
EEEHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC
DDPVLSRIETHMIATPQMALEAAAKVAAAHGYPAHILGDSIEGEAADVGKVMAGMALQVS
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
RHGQPFKAPCILLSGGETTVTVSGSGRGGRNVEFLLSLGVALEGRAGIHALAGDTDGVDG
CCCCCCCCCEEEEECCCEEEEEECCCCCCCCHHEEEECCCEECCCCCEEEECCCCCCCCC
QEEIAGAYLAPHSLQRAWGLGIRPKDSLDNNDGHSFFSALGDSIITGPTLTNLNDFRAIF
HHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHCCCCCCCCCCCCEEEE
ITGETA
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7592429 [H]