| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is ttuD [H]
Identifier: 71907744
GI number: 71907744
Start: 2288484
End: 2289764
Strand: Reverse
Name: ttuD [H]
Synonym: Daro_2118
Alternate gene names: 71907744
Gene position: 2289764-2288484 (Counterclockwise)
Preceding gene: 71907745
Following gene: 71907743
Centisome position: 50.87
GC content: 63.15
Gene sequence:
>1281_bases ATGACCACTCCCATCCAGCCGCGCCATTTGCTGCAGCAGATGTTCCACGCCGCCATCGAGGCCGCCCAGTCGACACATTG CATTCCGCCATACCTTCCAGAAGTACCTAACGGCCGCCTGATTGTCATCGGTGCCGGCAAGGCTTCGGCGGCGATGGCCC AGGCCGTCGAGGACAACTGGCCCGGCGAACTTTCCGGCCTGGTCGTCACCCGCTACGGCTATGGCGTTCCCTGCAAGCGC ATCGAAATCGTCGAAGCCGCCCATCCGGTGCCCGATGCCGCCGGGCTCGCCGCCGCCGGTCGCATTCGCGATCTGGTCAG CGACCTTACCGCCGACGACACGGTGCTCTGCCTGATCTCAGGCGGAGGTTCGGCGCTGCTTGCCTTGCCGCTCGCCGGCA TCACGCTTGAAGACAAGCAGGCAGTCAGTCGCGCCCTGCTCAAGTCGGGGGCCAGCATCAGCGAAATGAATTGCGTGCGC CGTCATCTGTCGGCGATCAAGGGCGGTCGCCTGGCTGCTGCCTGCCATCCTGCCCGAGTGGTCACGCTGCTGATTTCCGA CGTACCCGGCGACAATCCCTGCGACATCGCCTCCGGTCCCACCGTCGCCGACGCAACCACCTGCGCTGATGCGTTAGCCA TCGTCCGCCGCTATGGCATCGACCTGCCGCCGCATGTCCGGGAAATTCTCGAAAGCGGCGAGGGCGAATCCATCAAGCCG GACGATCCCGTGCTGAGCAGGATCGAAACTCACATGATTGCCACACCCCAGATGGCGCTCGAAGCTGCCGCCAAAGTCGC TGCTGCTCATGGCTACCCAGCTCACATTCTGGGAGACAGCATCGAAGGCGAAGCTGCCGATGTTGGCAAGGTCATGGCCG GCATGGCTTTGCAGGTTTCCCGTCATGGCCAACCGTTCAAAGCCCCCTGCATCCTGCTCTCCGGTGGAGAAACCACAGTT ACCGTCAGCGGCAGTGGGCGGGGCGGGCGCAATGTCGAGTTTCTTTTGTCACTCGGCGTGGCTCTCGAAGGCCGGGCCGG CATCCATGCCCTGGCCGGTGATACCGATGGTGTCGATGGACAGGAGGAGATTGCCGGCGCCTATCTCGCGCCCCACTCGC TACAACGCGCCTGGGGCTTGGGCATCCGTCCCAAGGATAGCCTCGACAACAACGATGGGCATTCCTTCTTCAGTGCCTTG GGCGACTCGATCATTACTGGCCCGACGCTGACCAACCTCAATGACTTTCGCGCCATTTTCATTACCGGCGAGACGGCTTG A
Upstream 100 bases:
>100_bases GGCCAAAATCGTCAATCGCTAACCCGGTGAATTGCGGCTTGGGCGACCTGCCTCGCCCAAGCCGCATGACGAAGTCACAC CCACTCCGAGGATTTCAGAC
Downstream 100 bases:
>100_bases GTCGCTCGCTTGAAAGGACACTGAACATGCACCGTAACCGTAATGCCAAAATTGTCGCCACCCTCGGCCCAGCCAGTTCT GATCGCGACACGATCCAGAA
Product: glycerate 2-kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 426; Mature: 425
Protein sequence:
>426_residues MTTPIQPRHLLQQMFHAAIEAAQSTHCIPPYLPEVPNGRLIVIGAGKASAAMAQAVEDNWPGELSGLVVTRYGYGVPCKR IEIVEAAHPVPDAAGLAAAGRIRDLVSDLTADDTVLCLISGGGSALLALPLAGITLEDKQAVSRALLKSGASISEMNCVR RHLSAIKGGRLAAACHPARVVTLLISDVPGDNPCDIASGPTVADATTCADALAIVRRYGIDLPPHVREILESGEGESIKP DDPVLSRIETHMIATPQMALEAAAKVAAAHGYPAHILGDSIEGEAADVGKVMAGMALQVSRHGQPFKAPCILLSGGETTV TVSGSGRGGRNVEFLLSLGVALEGRAGIHALAGDTDGVDGQEEIAGAYLAPHSLQRAWGLGIRPKDSLDNNDGHSFFSAL GDSIITGPTLTNLNDFRAIFITGETA
Sequences:
>Translated_426_residues MTTPIQPRHLLQQMFHAAIEAAQSTHCIPPYLPEVPNGRLIVIGAGKASAAMAQAVEDNWPGELSGLVVTRYGYGVPCKR IEIVEAAHPVPDAAGLAAAGRIRDLVSDLTADDTVLCLISGGGSALLALPLAGITLEDKQAVSRALLKSGASISEMNCVR RHLSAIKGGRLAAACHPARVVTLLISDVPGDNPCDIASGPTVADATTCADALAIVRRYGIDLPPHVREILESGEGESIKP DDPVLSRIETHMIATPQMALEAAAKVAAAHGYPAHILGDSIEGEAADVGKVMAGMALQVSRHGQPFKAPCILLSGGETTV TVSGSGRGGRNVEFLLSLGVALEGRAGIHALAGDTDGVDGQEEIAGAYLAPHSLQRAWGLGIRPKDSLDNNDGHSFFSAL GDSIITGPTLTNLNDFRAIFITGETA >Mature_425_residues TTPIQPRHLLQQMFHAAIEAAQSTHCIPPYLPEVPNGRLIVIGAGKASAAMAQAVEDNWPGELSGLVVTRYGYGVPCKRI EIVEAAHPVPDAAGLAAAGRIRDLVSDLTADDTVLCLISGGGSALLALPLAGITLEDKQAVSRALLKSGASISEMNCVRR HLSAIKGGRLAAACHPARVVTLLISDVPGDNPCDIASGPTVADATTCADALAIVRRYGIDLPPHVREILESGEGESIKPD DPVLSRIETHMIATPQMALEAAAKVAAAHGYPAHILGDSIEGEAADVGKVMAGMALQVSRHGQPFKAPCILLSGGETTVT VSGSGRGGRNVEFLLSLGVALEGRAGIHALAGDTDGVDGQEEIAGAYLAPHSLQRAWGLGIRPKDSLDNNDGHSFFSALG DSIITGPTLTNLNDFRAIFITGETA
Specific function: Degrades an unidentified toxic product from the first step of tartrate degradation [H]
COG id: COG2379
COG function: function code G; Putative glycerate kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI31543063, Length=442, Percent_Identity=35.5203619909502, Blast_Score=197, Evalue=1e-50, Organism=Caenorhabditis elegans, GI193205461, Length=448, Percent_Identity=31.9196428571429, Blast_Score=173, Evalue=2e-43, Organism=Drosophila melanogaster, GI19920578, Length=436, Percent_Identity=30.7339449541284, Blast_Score=149, Evalue=3e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007835 [H]
Pfam domain/function: PF05161 MOFRL [H]
EC number: =1.1.1.81 [H]
Molecular weight: Translated: 44093; Mature: 43962
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPIQPRHLLQQMFHAAIEAAQSTHCIPPYLPEVPNGRLIVIGAGKASAAMAQAVEDNW CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCC PGELSGLVVTRYGYGVPCKRIEIVEAAHPVPDAAGLAAAGRIRDLVSDLTADDTVLCLIS CCCCCCEEEEECCCCCCCCCEEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE GGGSALLALPLAGITLEDKQAVSRALLKSGASISEMNCVRRHLSAIKGGRLAAACHPARV CCCCEEEEEECCCCEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCHHHE VTLLISDVPGDNPCDIASGPTVADATTCADALAIVRRYGIDLPPHVREILESGEGESIKP EEEHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC DDPVLSRIETHMIATPQMALEAAAKVAAAHGYPAHILGDSIEGEAADVGKVMAGMALQVS CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH RHGQPFKAPCILLSGGETTVTVSGSGRGGRNVEFLLSLGVALEGRAGIHALAGDTDGVDG CCCCCCCCCEEEEECCCEEEEEECCCCCCCCHHEEEECCCEECCCCCEEEECCCCCCCCC QEEIAGAYLAPHSLQRAWGLGIRPKDSLDNNDGHSFFSALGDSIITGPTLTNLNDFRAIF HHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHCCCCCCCCCCCCEEEE ITGETA EECCCC >Mature Secondary Structure TTPIQPRHLLQQMFHAAIEAAQSTHCIPPYLPEVPNGRLIVIGAGKASAAMAQAVEDNW CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCC PGELSGLVVTRYGYGVPCKRIEIVEAAHPVPDAAGLAAAGRIRDLVSDLTADDTVLCLIS CCCCCCEEEEECCCCCCCCCEEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE GGGSALLALPLAGITLEDKQAVSRALLKSGASISEMNCVRRHLSAIKGGRLAAACHPARV CCCCEEEEEECCCCEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCHHHE VTLLISDVPGDNPCDIASGPTVADATTCADALAIVRRYGIDLPPHVREILESGEGESIKP EEEHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC DDPVLSRIETHMIATPQMALEAAAKVAAAHGYPAHILGDSIEGEAADVGKVMAGMALQVS CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH RHGQPFKAPCILLSGGETTVTVSGSGRGGRNVEFLLSLGVALEGRAGIHALAGDTDGVDG CCCCCCCCCEEEEECCCEEEEEECCCCCCCCHHEEEECCCEECCCCCEEEECCCCCCCCC QEEIAGAYLAPHSLQRAWGLGIRPKDSLDNNDGHSFFSALGDSIITGPTLTNLNDFRAIF HHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHCCCCCCCCCCCCEEEE ITGETA EECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7592429 [H]