Click here to switch to the map view.

The map label for this gene is alkR [H]

Identifier: 71907540

GI number: 71907540

Start: 2054177

End: 2055079

Strand: Reverse

Name: alkR [H]

Synonym: Daro_1911

Alternate gene names: 71907540

Gene position: 2055079-2054177 (Counterclockwise)

Preceding gene: 71907543

Following gene: 71907539

Centisome position: 45.66

GC content: 63.23

Gene sequence:

>903_bases
ATGCGAGCCATTATGTTGAACTTATCGCAATCATTCGTTCATTTATATTTGCAATTCGTACAGATGCCCGCTAACCGCCT
CGACCGACTTTCCGCCTTGCTCGAAGGCCTGGCGCCACGCGTCCAGGTCAACCTGCCGCCAGCCGGCATTGCCAGACTTA
ACTTCGCGGCGGAAGCACCTCCCTTCCTGCATATCCACTTGCTGGCAGAAGGTGAAATGCGCCTGCACCCAGGATCTGCC
AGCCTTACCCTTCAGGCGCCGTGCATTGTTGTCTGCCGTTCAGACACGGCGCATGCGCTCGAGACTCCCTCGGCGGAAAC
ATTCCAGCGCCTGATGTGCGCCCGCGCCTGGCTCGATGGACCGGTCGCCCCGCTGCTGCTCAACGAATTCGCTGCCCCGC
TGGTGGTTCCGGTCGACGGTGCCGAGTCCTCGCTGCGCCACGTCATCAACCTGATTTCGTCGGAACTGGAAGCGCCGCGT
TGCGGGCAGCCGGCACTGCTCGACCGGGCGGGCGATATCCTGTTCATTGGCCTGCTGCGCCACCTGATCGCCCACCCGAA
AACCGCCGGCGGCCTGTTGAACGGCCTGGCCGATCCGCGCATCGCCCGCGCCCTGGTGGTGATCCACGCCCGGCCGCAGG
ACAAATGGACGCTGGAATTGCTGGCCGAAGAAGCCGGCATGTCGCGCACCGCCTTCGCCAACACCTTCCGCGAAGTCATG
CGGACCACGCCGGGCAAGTATCTCTCGACCATCCGGCTGGCCATTGCCCAGCGAGCCGTGCAGTCGGGCAAAGGATTGAA
GGCGGCGGCACGGGATGCCGGCTACAACAGCACCTCTGCCCTGTCGCGAGCGCTGTCGCACATCAACCCTTCCCCAATCA
ATCTCCATGCACCTGGGCAATGA

Upstream 100 bases:

>100_bases
TCAGGGCGGTTGCAGTCATCGGGCATCCTTTCGTTGAATTGGAGGCGGCTTTGGAAACATCGTTCTGGTCCGGGGGCGGC
GAAACGTGATTCGTTGACCG

Downstream 100 bases:

>100_bases
TCCGGATAAGGGCTGAGGGAATCCTCCCCGACGCAGATCCATGTCGAAAGTGAAAGCGACATCGGGTGTTCTCAGCTAAG
CTTTACCGATTGATTGCTTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MRAIMLNLSQSFVHLYLQFVQMPANRLDRLSALLEGLAPRVQVNLPPAGIARLNFAAEAPPFLHIHLLAEGEMRLHPGSA
SLTLQAPCIVVCRSDTAHALETPSAETFQRLMCARAWLDGPVAPLLLNEFAAPLVVPVDGAESSLRHVINLISSELEAPR
CGQPALLDRAGDILFIGLLRHLIAHPKTAGGLLNGLADPRIARALVVIHARPQDKWTLELLAEEAGMSRTAFANTFREVM
RTTPGKYLSTIRLAIAQRAVQSGKGLKAAARDAGYNSTSALSRALSHINPSPINLHAPGQ

Sequences:

>Translated_300_residues
MRAIMLNLSQSFVHLYLQFVQMPANRLDRLSALLEGLAPRVQVNLPPAGIARLNFAAEAPPFLHIHLLAEGEMRLHPGSA
SLTLQAPCIVVCRSDTAHALETPSAETFQRLMCARAWLDGPVAPLLLNEFAAPLVVPVDGAESSLRHVINLISSELEAPR
CGQPALLDRAGDILFIGLLRHLIAHPKTAGGLLNGLADPRIARALVVIHARPQDKWTLELLAEEAGMSRTAFANTFREVM
RTTPGKYLSTIRLAIAQRAVQSGKGLKAAARDAGYNSTSALSRALSHINPSPINLHAPGQ
>Mature_300_residues
MRAIMLNLSQSFVHLYLQFVQMPANRLDRLSALLEGLAPRVQVNLPPAGIARLNFAAEAPPFLHIHLLAEGEMRLHPGSA
SLTLQAPCIVVCRSDTAHALETPSAETFQRLMCARAWLDGPVAPLLLNEFAAPLVVPVDGAESSLRHVINLISSELEAPR
CGQPALLDRAGDILFIGLLRHLIAHPKTAGGLLNGLADPRIARALVVIHARPQDKWTLELLAEEAGMSRTAFANTFREVM
RTTPGKYLSTIRLAIAQRAVQSGKGLKAAARDAGYNSTSALSRALSHINPSPINLHAPGQ

Specific function: This protein activates the expression of the alkane 1- monooxygenase AlkM [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=265, Percent_Identity=27.5471698113208, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32334; Mature: 32334

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAIMLNLSQSFVHLYLQFVQMPANRLDRLSALLEGLAPRVQVNLPPAGIARLNFAAEAP
CCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHEECCCCCC
PFLHIHLLAEGEMRLHPGSASLTLQAPCIVVCRSDTAHALETPSAETFQRLMCARAWLDG
CEEEEEEEECCCEEECCCCCCEEEECCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHCCC
PVAPLLLNEFAAPLVVPVDGAESSLRHVINLISSELEAPRCGQPALLDRAGDILFIGLLR
CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHH
HLIAHPKTAGGLLNGLADPRIARALVVIHARPQDKWTLELLAEEAGMSRTAFANTFREVM
HHHCCCCHHHHHHHCCCCHHHHEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
RTTPGKYLSTIRLAIAQRAVQSGKGLKAAARDAGYNSTSALSRALSHINPSPINLHAPGQ
HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCC
>Mature Secondary Structure
MRAIMLNLSQSFVHLYLQFVQMPANRLDRLSALLEGLAPRVQVNLPPAGIARLNFAAEAP
CCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHEECCCCCC
PFLHIHLLAEGEMRLHPGSASLTLQAPCIVVCRSDTAHALETPSAETFQRLMCARAWLDG
CEEEEEEEECCCEEECCCCCCEEEECCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHCCC
PVAPLLLNEFAAPLVVPVDGAESSLRHVINLISSELEAPRCGQPALLDRAGDILFIGLLR
CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHH
HLIAHPKTAGGLLNGLADPRIARALVVIHARPQDKWTLELLAEEAGMSRTAFANTFREVM
HHHCCCCHHHHHHHCCCCHHHHEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
RTTPGKYLSTIRLAIAQRAVQSGKGLKAAARDAGYNSTSALSRALSHINPSPINLHAPGQ
HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9546151 [H]