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The map label for this gene is cph2 [H]

Identifier: 71907296

GI number: 71907296

Start: 1789912

End: 1790853

Strand: Reverse

Name: cph2 [H]

Synonym: Daro_1665

Alternate gene names: 71907296

Gene position: 1790853-1789912 (Counterclockwise)

Preceding gene: 71907300

Following gene: 71907293

Centisome position: 39.79

GC content: 59.66

Gene sequence:

>942_bases
ATGAAAATACTAATCGTGGAGGATTCGCGTGCTGTGGCGGCTGTCATGGCAGCTCGGCTAAATTCGCTGGGTCACGAAGT
CGAGATCGCTGAAAACGGAGCCGTCGGTGTCGAGAAATTTGAATCCGGCCAGCCCGATCTGGTATTCATGGATATCGAAA
TGCCGGTCATGAACGGTTTCGAGGCAACCAACCGGATTCGCGCCCTTGAGGCCCTGCAGCCATGGGCATGGACGCCGATC
ATTTTCCTGACCGCCTCCGACACTGCCGAAAACCTCATCACCGCCATCGAAGCCGGCGGTGACGATTTCATGTCCAAATC
CGTTCCCGAACCGGTACTCGAAGCCAAGATGAAAGCCATGGCCCGTATTGCAGCCCTGCGACAACGGCTTTCCTTCGCCA
ACCGGAAACTGGAGGAGCTGGCCAGCCAGGATGGCTTGACCGGCCTGGCCAATCGGCGCCACATGGATCTACGGACCGAT
CTGGCCTGGGACGAGGCCTTGCGTCGGACCGGCAGTTTTGCGCTGTTCATGATTGACGTGGACCATTTCAAACGCTACAA
CGACCACTACGGACATCAGGCCGGTGACGACTGCCTGAGGGCAGTTGCCGGCGCACTCGCCTACACGGTCAGTGCCACGG
AAGTGGAGGGATTGACCCAGAACGCGTTCGTCGCACGTTATGGCGGCGAGGAGTTCGCCGTCGTCGTTCCCGCGGCCAGT
GAAGCAGCTTTCAAGCACCTTGCTGTCGCACTAATCGAAGCGGTGCGCAAACTCGACCTGCCGCATGAGAAAAACGATGC
CGGCGGCCGGGTTAGCATCTCTGCCGGCGGCGTGCGCTGTGCAGTCGCGGCCGATAAGTTGGTCAATCTCTTCCGTCTGG
CTGATGCCCGCCTGTATCGGGCCAAGCATGATGGGCGCAACCGGGCGGTTGTCTCGGACTGA

Upstream 100 bases:

>100_bases
GGAGGTAGCGGCCAGTAGGAATGAAGAAATATTACGTCGGCTCAGGTCACCGAAGCGATCACCTGCTGCCTACGACTTGC
AGTTCGAACGGAAATGAACA

Downstream 100 bases:

>100_bases
GCATAGAGTTCGCATGGCCCCCCGCATTCTGGTAGTCGATGACAACGAGAGCAAGGCTGAGGTGCTCAGTTTTTTGCGGC
ATAACGTTTGAATTCACCGG

Product: response regulator receiver modulated diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKILIVEDSRAVAAVMAARLNSLGHEVEIAENGAVGVEKFESGQPDLVFMDIEMPVMNGFEATNRIRALEALQPWAWTPI
IFLTASDTAENLITAIEAGGDDFMSKSVPEPVLEAKMKAMARIAALRQRLSFANRKLEELASQDGLTGLANRRHMDLRTD
LAWDEALRRTGSFALFMIDVDHFKRYNDHYGHQAGDDCLRAVAGALAYTVSATEVEGLTQNAFVARYGGEEFAVVVPAAS
EAAFKHLAVALIEAVRKLDLPHEKNDAGGRVSISAGGVRCAVAADKLVNLFRLADARLYRAKHDGRNRAVVSD

Sequences:

>Translated_313_residues
MKILIVEDSRAVAAVMAARLNSLGHEVEIAENGAVGVEKFESGQPDLVFMDIEMPVMNGFEATNRIRALEALQPWAWTPI
IFLTASDTAENLITAIEAGGDDFMSKSVPEPVLEAKMKAMARIAALRQRLSFANRKLEELASQDGLTGLANRRHMDLRTD
LAWDEALRRTGSFALFMIDVDHFKRYNDHYGHQAGDDCLRAVAGALAYTVSATEVEGLTQNAFVARYGGEEFAVVVPAAS
EAAFKHLAVALIEAVRKLDLPHEKNDAGGRVSISAGGVRCAVAADKLVNLFRLADARLYRAKHDGRNRAVVSD
>Mature_313_residues
MKILIVEDSRAVAAVMAARLNSLGHEVEIAENGAVGVEKFESGQPDLVFMDIEMPVMNGFEATNRIRALEALQPWAWTPI
IFLTASDTAENLITAIEAGGDDFMSKSVPEPVLEAKMKAMARIAALRQRLSFANRKLEELASQDGLTGLANRRHMDLRTD
LAWDEALRRTGSFALFMIDVDHFKRYNDHYGHQAGDDCLRAVAGALAYTVSATEVEGLTQNAFVARYGGEEFAVVVPAAS
EAAFKHLAVALIEAVRKLDLPHEKNDAGGRVSISAGGVRCAVAADKLVNLFRLADARLYRAKHDGRNRAVVSD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=184, Percent_Identity=30.9782608695652, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787262, Length=181, Percent_Identity=30.939226519337, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=34.2857142857143, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87082007, Length=222, Percent_Identity=32.8828828828829, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787802, Length=146, Percent_Identity=32.8767123287671, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787816, Length=176, Percent_Identity=32.9545454545455, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=34.1176470588235, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787541, Length=179, Percent_Identity=30.7262569832402, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788381, Length=179, Percent_Identity=30.1675977653631, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786784, Length=125, Percent_Identity=31.2, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788956, Length=179, Percent_Identity=34.0782122905028, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI145693157, Length=121, Percent_Identity=31.404958677686, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1788550, Length=105, Percent_Identity=33.3333333333333, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 34107; Mature: 34107

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILIVEDSRAVAAVMAARLNSLGHEVEIAENGAVGVEKFESGQPDLVFMDIEMPVMNGF
CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCEEEEEECCCHHCCC
EATNRIRALEALQPWAWTPIIFLTASDTAENLITAIEAGGDDFMSKSVPEPVLEAKMKAM
HHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHH
ARIAALRQRLSFANRKLEELASQDGLTGLANRRHMDLRTDLAWDEALRRTGSFALFMIDV
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEH
DHFKRYNDHYGHQAGDDCLRAVAGALAYTVSATEVEGLTQNAFVARYGGEEFAVVVPAAS
HHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEHHHHCCCCCCCEEEEECCCEEEEEEECCH
EAAFKHLAVALIEAVRKLDLPHEKNDAGGRVSISAGGVRCAVAADKLVNLFRLADARLYR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHH
AKHDGRNRAVVSD
HHCCCCCCCCCCC
>Mature Secondary Structure
MKILIVEDSRAVAAVMAARLNSLGHEVEIAENGAVGVEKFESGQPDLVFMDIEMPVMNGF
CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCEEEEEECCCHHCCC
EATNRIRALEALQPWAWTPIIFLTASDTAENLITAIEAGGDDFMSKSVPEPVLEAKMKAM
HHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHH
ARIAALRQRLSFANRKLEELASQDGLTGLANRRHMDLRTDLAWDEALRRTGSFALFMIDV
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEH
DHFKRYNDHYGHQAGDDCLRAVAGALAYTVSATEVEGLTQNAFVARYGGEEFAVVVPAAS
HHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEHHHHCCCCCCCEEEEECCCEEEEEEECCH
EAAFKHLAVALIEAVRKLDLPHEKNDAGGRVSISAGGVRCAVAADKLVNLFRLADARLYR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHH
AKHDGRNRAVVSD
HHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]