| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is nosZ [H]
Identifier: 71907203
GI number: 71907203
Start: 1683331
End: 1685613
Strand: Reverse
Name: nosZ [H]
Synonym: Daro_1571
Alternate gene names: 71907203
Gene position: 1685613-1683331 (Counterclockwise)
Preceding gene: 71907204
Following gene: 71907202
Centisome position: 37.45
GC content: 57.86
Gene sequence:
>2283_bases ATGAAGAAATTTGTAGTTAAGACGACCGCGGTTTTGCTGGCAGCGGGTTTTGCCGCCACGGCATGGTCTGCCGAATCGCT GCAGGACGTGATGAAGCGTCGCGGTCTCAGCCAGCAGGATCTGCTCGCTGCCTCCAAGACCTATGTCCCGACCGGCAAGC GTGACGAGTTCGTCGCCTTCAGTTCTGGCGGCCAGTCCGGCCAGATCATCGTGTACGGTATTCCGTCCATGCGCATCCTG AAGTACATCGGCGTCTTCACGCCGGAACCTTGGCAAGGCTACGGCTTTGACGAAGAATCCAAGGCTGTGCTGCGTCAGGG CAACATCGACGGCAAGGAAATCAACTGGGGCGATACGCACCACCCGGCCATGTCCGAAACCCAGGGCAAGTATGACGGTC AGTTCCTCTTCATCAACGACAAGGCCAATCCGCGCCTCGCCGTGATCGACCTGCGTGACTTCGAAACCAAGCAGATCGTG GTCAACCCGATCTTCAAGTCCGAACACGGTGGCGCCTTCGTCACCCAGGATACGGACTACGTCATCGAAGCTGCCCAGTA CGCCTCGCCGCTCGAGAACAAGAAGTTCTTCCCGCTCGAAGAGTTCAACGAAAAGTATCGCGGTGGTGTGACCTACTGGA AGTTCGACCGCAAGGAAGGCCGCATCGATCCGAAGAAGTCGTTCTCCCTCGAACTGCCGCCGTACAGCCAGGACTTGTCT GACGCGGGTAAAGGCCCGTCCGACGGTTGGTCCTTCACCAATTCCTTCTGTTCCGAGCGTTACGTTGGCGGCATCGAAAA AGGCCGTCCGCCGTATGAAGCCGGTTGCTCTGCCAAGGACACCGACTATCTGCACGTGATCAACTGGAAGAAGGCTGCTG AACTGGTTGCCCAGGGCAAGGCCAAGAAGATCAACGGCCACGACGTGATCATGATGGAAACCGCGATCAAGGAAGGCATC CTCTTCCTGGTTCCGGAACCGAAGTCGCCGCACGGCGTCGACGTCACGCCGGACGGCAAGTTCCTGACCGTTGCCGGCAA ACTCGACACCCACGTCTCCGTCTATTCCTTCGAGAAGATTCAGGCCGCCATCAAGGCCGGCAAGTTCGAATCCAAGGATC CGTACGGTATTCCGGTCATCGGCATGAAGGATGCACTGCACACCCAGGTTCAGCTCGGCCTTGGCCCATTGCATACCCAG TATGACTCCAAGCCGTGTATCGCCTACACCTCGCTTTACGTCGACTCCCAAGTCGTCAAGTGGAATCACTGTGAAGGCAA GGTCCTCGACAAGATCTCGGTGCACTACAACATCGGTCACCTGATGACCATGGAAGGCGACTCGGCTGATCCGAAGGGCC GTTACCTGGTGGCGCTGAACAAGCTCTCCATCGACCGCTTCACGCCGGTTGGTCCGCTGCATCCGCAGAACCACCAGTTG ATCGACATCAGCAACGACAAGATGCAACTCCTGTACGACATGCCCGTACCGCTGGGTGAGCCGCACTACGTGGTGGCCAT CGAAGCCTCGAAGCTGAAACCAGGCGTTCGCTACAAGGTCGGCACCAACAGCCGTACCGACAAGCCGAGCCCGTTCGGTG TTCGCGCCGGTGAAGAGCACACCGACAAGAAGGGTAACAAGATCGAAGTCTTTGGCACCCTGATCCGTTCGCACATCACG CCGGAAACCATCGAAGCCGAAGTCGGCGACGAAGTGACGGTCCACCTGACTAACCTGGAACGCGCTCAGGACGAAACCCA CGGCTTTACCGTGTCGACGTTCAACACCCACGCTTCAGTTGAGCCGGGCAAGACGGTGACCGTCAAGTTCAAGGCGGACA AGGAAGGCGTCTATCCGTACTACTGCACGGAATTCTGCTCCGCACTGCACCTTGAAATGCAGGGTTACCTGCTGGTCAAG CCGAAGGGCTGGAAGCCGGGCAAGACGGCCGAAGCCAAGGCCAGCTACACGGAAGCCGACTATAAGGCGACGGTGAAGAA GGTGGCTGATACCCAGGTCGTTATTGATTCCGTGGTGGGTTTCATCACCAGCGTGAATTACAAGGACTTCCCGGATGTCG TGGCCATGGTCGAAGATGCAACCGACCAGTTGAACAAGATGAAGGATGCCAAGGCCAAGCACGAAGCCGCAGCCGCCAAG AAGGATTGGGACCAGGCCAACCTGTGGGCTGAGCAAGTCTGGCAATACCAGGTCAAGGCAGCTGACATCGGCCTGCGTGC CAAGACCTACCTCGAACAGAACGGCGCCAAGAAGGTCAAGTAA
Upstream 100 bases:
>100_bases ACGGAAGCGCACAATGCGACAAATTCCCGGTGCGACACATTGCCGCACCTCGAATCCCGGCTCAATGCACTGGAGTCATG TTTCCAAGGGGAGAATCAAG
Downstream 100 bases:
>100_bases CAAAAATGGAAGCTTGACTTAACTCAAGGTAATAAACGAGGAACAGATTCAATCTGTTCCCCGTTTCAATATAGGAGGGA AAAACCATGAAACTAATAGT
Product: cytochrome c oxidase, subunit II
Products: NA
Alternate protein names: N(2)OR; N2O reductase [H]
Number of amino acids: Translated: 760; Mature: 760
Protein sequence:
>760_residues MKKFVVKTTAVLLAAGFAATAWSAESLQDVMKRRGLSQQDLLAASKTYVPTGKRDEFVAFSSGGQSGQIIVYGIPSMRIL KYIGVFTPEPWQGYGFDEESKAVLRQGNIDGKEINWGDTHHPAMSETQGKYDGQFLFINDKANPRLAVIDLRDFETKQIV VNPIFKSEHGGAFVTQDTDYVIEAAQYASPLENKKFFPLEEFNEKYRGGVTYWKFDRKEGRIDPKKSFSLELPPYSQDLS DAGKGPSDGWSFTNSFCSERYVGGIEKGRPPYEAGCSAKDTDYLHVINWKKAAELVAQGKAKKINGHDVIMMETAIKEGI LFLVPEPKSPHGVDVTPDGKFLTVAGKLDTHVSVYSFEKIQAAIKAGKFESKDPYGIPVIGMKDALHTQVQLGLGPLHTQ YDSKPCIAYTSLYVDSQVVKWNHCEGKVLDKISVHYNIGHLMTMEGDSADPKGRYLVALNKLSIDRFTPVGPLHPQNHQL IDISNDKMQLLYDMPVPLGEPHYVVAIEASKLKPGVRYKVGTNSRTDKPSPFGVRAGEEHTDKKGNKIEVFGTLIRSHIT PETIEAEVGDEVTVHLTNLERAQDETHGFTVSTFNTHASVEPGKTVTVKFKADKEGVYPYYCTEFCSALHLEMQGYLLVK PKGWKPGKTAEAKASYTEADYKATVKKVADTQVVIDSVVGFITSVNYKDFPDVVAMVEDATDQLNKMKDAKAKHEAAAAK KDWDQANLWAEQVWQYQVKAADIGLRAKTYLEQNGAKKVK
Sequences:
>Translated_760_residues MKKFVVKTTAVLLAAGFAATAWSAESLQDVMKRRGLSQQDLLAASKTYVPTGKRDEFVAFSSGGQSGQIIVYGIPSMRIL KYIGVFTPEPWQGYGFDEESKAVLRQGNIDGKEINWGDTHHPAMSETQGKYDGQFLFINDKANPRLAVIDLRDFETKQIV VNPIFKSEHGGAFVTQDTDYVIEAAQYASPLENKKFFPLEEFNEKYRGGVTYWKFDRKEGRIDPKKSFSLELPPYSQDLS DAGKGPSDGWSFTNSFCSERYVGGIEKGRPPYEAGCSAKDTDYLHVINWKKAAELVAQGKAKKINGHDVIMMETAIKEGI LFLVPEPKSPHGVDVTPDGKFLTVAGKLDTHVSVYSFEKIQAAIKAGKFESKDPYGIPVIGMKDALHTQVQLGLGPLHTQ YDSKPCIAYTSLYVDSQVVKWNHCEGKVLDKISVHYNIGHLMTMEGDSADPKGRYLVALNKLSIDRFTPVGPLHPQNHQL IDISNDKMQLLYDMPVPLGEPHYVVAIEASKLKPGVRYKVGTNSRTDKPSPFGVRAGEEHTDKKGNKIEVFGTLIRSHIT PETIEAEVGDEVTVHLTNLERAQDETHGFTVSTFNTHASVEPGKTVTVKFKADKEGVYPYYCTEFCSALHLEMQGYLLVK PKGWKPGKTAEAKASYTEADYKATVKKVADTQVVIDSVVGFITSVNYKDFPDVVAMVEDATDQLNKMKDAKAKHEAAAAK KDWDQANLWAEQVWQYQVKAADIGLRAKTYLEQNGAKKVK >Mature_760_residues MKKFVVKTTAVLLAAGFAATAWSAESLQDVMKRRGLSQQDLLAASKTYVPTGKRDEFVAFSSGGQSGQIIVYGIPSMRIL KYIGVFTPEPWQGYGFDEESKAVLRQGNIDGKEINWGDTHHPAMSETQGKYDGQFLFINDKANPRLAVIDLRDFETKQIV VNPIFKSEHGGAFVTQDTDYVIEAAQYASPLENKKFFPLEEFNEKYRGGVTYWKFDRKEGRIDPKKSFSLELPPYSQDLS DAGKGPSDGWSFTNSFCSERYVGGIEKGRPPYEAGCSAKDTDYLHVINWKKAAELVAQGKAKKINGHDVIMMETAIKEGI LFLVPEPKSPHGVDVTPDGKFLTVAGKLDTHVSVYSFEKIQAAIKAGKFESKDPYGIPVIGMKDALHTQVQLGLGPLHTQ YDSKPCIAYTSLYVDSQVVKWNHCEGKVLDKISVHYNIGHLMTMEGDSADPKGRYLVALNKLSIDRFTPVGPLHPQNHQL IDISNDKMQLLYDMPVPLGEPHYVVAIEASKLKPGVRYKVGTNSRTDKPSPFGVRAGEEHTDKKGNKIEVFGTLIRSHIT PETIEAEVGDEVTVHLTNLERAQDETHGFTVSTFNTHASVEPGKTVTVKFKADKEGVYPYYCTEFCSALHLEMQGYLLVK PKGWKPGKTAEAKASYTEADYKATVKKVADTQVVIDSVVGFITSVNYKDFPDVVAMVEDATDQLNKMKDAKAKHEAAAAK KDWDQANLWAEQVWQYQVKAADIGLRAKTYLEQNGAKKVK
Specific function: Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide [H]
COG id: COG4263
COG function: function code C; Nitrous oxide reductase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001505 - InterPro: IPR008972 - InterPro: IPR002429 - InterPro: IPR011045 - InterPro: IPR006311 - InterPro: IPR015943 [H]
Pfam domain/function: PF00116 COX2 [H]
EC number: =1.7.99.6 [H]
Molecular weight: Translated: 84411; Mature: 84411
Theoretical pI: Translated: 7.24; Mature: 7.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKFVVKTTAVLLAAGFAATAWSAESLQDVMKRRGLSQQDLLAASKTYVPTGKRDEFVAF CCCEEHHHHHHHHHHCHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCEEEE SSGGQSGQIIVYGIPSMRILKYIGVFTPEPWQGYGFDEESKAVLRQGNIDGKEINWGDTH CCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC HPAMSETQGKYDGQFLFINDKANPRLAVIDLRDFETKQIVVNPIFKSEHGGAFVTQDTDY CCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEECCCHH VIEAAQYASPLENKKFFPLEEFNEKYRGGVTYWKFDRKEGRIDPKKSFSLELPPYSQDLS HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCHH DAGKGPSDGWSFTNSFCSERYVGGIEKGRPPYEAGCSAKDTDYLHVINWKKAAELVAQGK HCCCCCCCCCHHHHHHHHHHHCCCHHCCCCCHHCCCCCCCCCEEEEECHHHHHHHHHCCC AKKINGHDVIMMETAIKEGILFLVPEPKSPHGVDVTPDGKFLTVAGKLDTHVSVYSFEKI CEECCCCEEEEEEEHHHCCEEEEEECCCCCCCEEECCCCCEEEEECCCCCEEEEEEHHHH QAAIKAGKFESKDPYGIPVIGMKDALHTQVQLGLGPLHTQYDSKPCIAYTSLYVDSQVVK HHHHHHCCCCCCCCCCCEEEECCHHHHHEEEECCCCCCCCCCCCCCEEEEEEEECCEEEE WNHCEGKVLDKISVHYNIGHLMTMEGDSADPKGRYLVALNKLSIDRFTPVGPLHPQNHQL EECCCCCEEEEEEEEEECCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEE IDISNDKMQLLYDMPVPLGEPHYVVAIEASKLKPGVRYKVGTNSRTDKPSPFGVRAGEEH EEECCCCEEEEEECCCCCCCCCEEEEEEHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCC TDKKGNKIEVFGTLIRSHITPETIEAEVGDEVTVHLTNLERAQDETHGFTVSTFNTHASV CCCCCCEEEEHHHHHHHCCCCCHHHHCCCCEEEEEEECCHHHHHHHCCEEEEEECCCCCC EPGKTVTVKFKADKEGVYPYYCTEFCSALHLEMQGYLLVKPKGWKPGKTAEAKASYTEAD CCCCEEEEEEECCCCCCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCCCCCCCCCCHHH YKATVKKVADTQVVIDSVVGFITSVNYKDFPDVVAMVEDATDQLNKMKDAKAKHEAAAAK HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDWDQANLWAEQVWQYQVKAADIGLRAKTYLEQNGAKKVK CCCHHHHHHHHHHHHEEEEEECCCCHHHHHHHCCCCCCCC >Mature Secondary Structure MKKFVVKTTAVLLAAGFAATAWSAESLQDVMKRRGLSQQDLLAASKTYVPTGKRDEFVAF CCCEEHHHHHHHHHHCHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCEEEE SSGGQSGQIIVYGIPSMRILKYIGVFTPEPWQGYGFDEESKAVLRQGNIDGKEINWGDTH CCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC HPAMSETQGKYDGQFLFINDKANPRLAVIDLRDFETKQIVVNPIFKSEHGGAFVTQDTDY CCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEECCCHH VIEAAQYASPLENKKFFPLEEFNEKYRGGVTYWKFDRKEGRIDPKKSFSLELPPYSQDLS HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCHH DAGKGPSDGWSFTNSFCSERYVGGIEKGRPPYEAGCSAKDTDYLHVINWKKAAELVAQGK HCCCCCCCCCHHHHHHHHHHHCCCHHCCCCCHHCCCCCCCCCEEEEECHHHHHHHHHCCC AKKINGHDVIMMETAIKEGILFLVPEPKSPHGVDVTPDGKFLTVAGKLDTHVSVYSFEKI CEECCCCEEEEEEEHHHCCEEEEEECCCCCCCEEECCCCCEEEEECCCCCEEEEEEHHHH QAAIKAGKFESKDPYGIPVIGMKDALHTQVQLGLGPLHTQYDSKPCIAYTSLYVDSQVVK HHHHHHCCCCCCCCCCCEEEECCHHHHHEEEECCCCCCCCCCCCCCEEEEEEEECCEEEE WNHCEGKVLDKISVHYNIGHLMTMEGDSADPKGRYLVALNKLSIDRFTPVGPLHPQNHQL EECCCCCEEEEEEEEEECCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEE IDISNDKMQLLYDMPVPLGEPHYVVAIEASKLKPGVRYKVGTNSRTDKPSPFGVRAGEEH EEECCCCEEEEEECCCCCCCCCEEEEEEHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCC TDKKGNKIEVFGTLIRSHITPETIEAEVGDEVTVHLTNLERAQDETHGFTVSTFNTHASV CCCCCCEEEEHHHHHHHCCCCCHHHHCCCCEEEEEEECCHHHHHHHCCEEEEEECCCCCC EPGKTVTVKFKADKEGVYPYYCTEFCSALHLEMQGYLLVKPKGWKPGKTAEAKASYTEAD CCCCEEEEEEECCCCCCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCCCCCCCCCCHHH YKATVKKVADTQVVIDSVVGFITSVNYKDFPDVVAMVEDATDQLNKMKDAKAKHEAAAAK HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDWDQANLWAEQVWQYQVKAADIGLRAKTYLEQNGAKKVK CCCHHHHHHHHHHHHEEEEEECCCCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3049543; 2170125; 1644760; 2542963; 11456570 [H]