Click here to switch to the map view.

The map label for this gene is fdxD [H]

Identifier: 71907081

GI number: 71907081

Start: 1578538

End: 1578900

Strand: Reverse

Name: fdxD [H]

Synonym: Daro_1449

Alternate gene names: 71907081

Gene position: 1578900-1578538 (Counterclockwise)

Preceding gene: 71907082

Following gene: 71907080

Centisome position: 35.08

GC content: 62.81

Gene sequence:

>363_bases
ATGGCCCTCATTACATTCAGCAGCCCGCTGCACAAGGACAAGACGGTCTATGCCGTCGCCGGCAGCCACACCCAGACCAT
CCTCGATCTGGCCAAGGAACATCACATCCCGATCGACTTCGGCTGCCAGGAAGGCAACTGTGGTACCTGTCTGGTCAAGG
TCTCGTCGGTCGACGGCAAGCGCGCGCCGATGGGGGGCCCGCTCAACGTCCGCGAAGTCGCCGCCCTGCTCGAGCTCGGC
CACATCACCAAGGCCCAGGTCGACCAGATGTACGTCGACGACATCCCGCCGACCCAGTGGCGCCTCGCCTGCCAGATGAT
CGTCCGCGACGAGGACATCCTGGTCGAATATCCGAGCAAATAA

Upstream 100 bases:

>100_bases
TCAAGCCAGCCTGAACGCTACCGCGACAGAACAAGATTAAAAGCAATCACCCAACCCCAACAGAGAAATTCAAACAACCC
GCTTTCCGGAGAAACAAGAA

Downstream 100 bases:

>100_bases
GGCAAAAGACATGAACGGTCCGGATCGTCTGCCCCTGCGGCCATTGCTGCTGGCCGACCTACTGGCTTCGCCGGCAATCG
GGCCGGCGGCGTTCGATCCG

Product: ferredoxin

Products: NA

Alternate protein names: Ferredoxin V; FdV; Ferredoxin, plant-type [H]

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MALITFSSPLHKDKTVYAVAGSHTQTILDLAKEHHIPIDFGCQEGNCGTCLVKVSSVDGKRAPMGGPLNVREVAALLELG
HITKAQVDQMYVDDIPPTQWRLACQMIVRDEDILVEYPSK

Sequences:

>Translated_120_residues
MALITFSSPLHKDKTVYAVAGSHTQTILDLAKEHHIPIDFGCQEGNCGTCLVKVSSVDGKRAPMGGPLNVREVAALLELG
HITKAQVDQMYVDDIPPTQWRLACQMIVRDEDILVEYPSK
>Mature_119_residues
ALITFSSPLHKDKTVYAVAGSHTQTILDLAKEHHIPIDFGCQEGNCGTCLVKVSSVDGKRAPMGGPLNVREVAALLELGH
ITKAQVDQMYVDDIPPTQWRLACQMIVRDEDILVEYPSK

Specific function: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. This ferredoxin probably participates in nitrogen fixation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041 [H]

Pfam domain/function: PF00111 Fer2 [H]

EC number: NA

Molecular weight: Translated: 13187; Mature: 13056

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALITFSSPLHKDKTVYAVAGSHTQTILDLAKEHHIPIDFGCQEGNCGTCLVKVSSVDGK
CEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEECCCCC
RAPMGGPLNVREVAALLELGHITKAQVDQMYVDDIPPTQWRLACQMIVRDEDILVEYPSK
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHEEECCCCCHHHHHHHHHHCCCCCEEEECCCC
>Mature Secondary Structure 
ALITFSSPLHKDKTVYAVAGSHTQTILDLAKEHHIPIDFGCQEGNCGTCLVKVSSVDGK
EEEECCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEECCCCC
RAPMGGPLNVREVAALLELGHITKAQVDQMYVDDIPPTQWRLACQMIVRDEDILVEYPSK
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHEEECCCCCHHHHHHHHHHCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7693551 [H]