| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is bcp [H]
Identifier: 71906862
GI number: 71906862
Start: 1327452
End: 1327940
Strand: Reverse
Name: bcp [H]
Synonym: Daro_1223
Alternate gene names: 71906862
Gene position: 1327940-1327452 (Counterclockwise)
Preceding gene: 71906865
Following gene: 71906861
Centisome position: 29.5
GC content: 54.4
Gene sequence:
>489_bases ATGGCTCAAACACCACAACACAGAGGCATCCGCATGCTCGATACAAAAATCCCCGACTTCTCCCTGCCCGCCACCAGCGG CACAACCTTCAACCTGGCCGCACAGGCCGGCAAGATTGTGGTCATCTATTTCTATCCAAAGGACAGCACCCCTGGCTGCA CCACGCAAGGGCAGAATTTTCGCGACCTCCACGATCAGTTTGCCGCAGCAAACGCGGTCGTTCTCGGTATCTCCCGGGAC AGCCTGAAGTCACATGAAAACTTCAAGGCCAAGCAGGAATTCCCGTTTGAACTCGGTTCGGATGCCGATGAAGCCGTCTG TAACCTGTTCTCTGTCATGAAAATGAAAAACATGTATGGGAAACAAGTCCGTGGCATAGAACGGAGCACTTTCGTCATCG ACCTCAACGGCGTGCTGCGCCGCGAATGGCGCGGTGTCAAAGTGCCCGGCCACGTCCAGGAAGTGCTCGATTTCGTCAAA ACCCTTTAA
Upstream 100 bases:
>100_bases GGCGATGACAACAGTGAGACCGGCACAGATTTTTCGCATGGCACGCAGTTTAGCAAATGCCCGCGACAGCGCTTGACCAG CCCGATGAGAATTGCCCACA
Downstream 100 bases:
>100_bases CCCCTTTTCCCACCCCGACCAAAGGCCCACTCCATGCCGCGCAAGCCCGCTGCCACAAAGAAGCCCGCCGTTACCAAGAT TTTCGTTCTCGATACCAACG
Product: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: NA
Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MAQTPQHRGIRMLDTKIPDFSLPATSGTTFNLAAQAGKIVVIYFYPKDSTPGCTTQGQNFRDLHDQFAAANAVVLGISRD SLKSHENFKAKQEFPFELGSDADEAVCNLFSVMKMKNMYGKQVRGIERSTFVIDLNGVLRREWRGVKVPGHVQEVLDFVK TL
Sequences:
>Translated_162_residues MAQTPQHRGIRMLDTKIPDFSLPATSGTTFNLAAQAGKIVVIYFYPKDSTPGCTTQGQNFRDLHDQFAAANAVVLGISRD SLKSHENFKAKQEFPFELGSDADEAVCNLFSVMKMKNMYGKQVRGIERSTFVIDLNGVLRREWRGVKVPGHVQEVLDFVK TL >Mature_161_residues AQTPQHRGIRMLDTKIPDFSLPATSGTTFNLAAQAGKIVVIYFYPKDSTPGCTTQGQNFRDLHDQFAAANAVVLGISRDS LKSHENFKAKQEFPFELGSDADEAVCNLFSVMKMKNMYGKQVRGIERSTFVIDLNGVLRREWRGVKVPGHVQEVLDFVKT L
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1788825, Length=143, Percent_Identity=39.8601398601399, Blast_Score=103, Evalue=8e-24, Organism=Saccharomyces cerevisiae, GI6322180, Length=138, Percent_Identity=32.6086956521739, Blast_Score=67, Evalue=1e-12,
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 18096; Mature: 17965
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQTPQHRGIRMLDTKIPDFSLPATSGTTFNLAAQAGKIVVIYFYPKDSTPGCTTQGQNF CCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCH RDLHDQFAAANAVVLGISRDSLKSHENFKAKQEFPFELGSDADEAVCNLFSVMKMKNMYG HHHHHHHHHCCEEEEECCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH KQVRGIERSTFVIDLNGVLRREWRGVKVPGHVQEVLDFVKTL HHHCCCCCCEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure AQTPQHRGIRMLDTKIPDFSLPATSGTTFNLAAQAGKIVVIYFYPKDSTPGCTTQGQNF CCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCH RDLHDQFAAANAVVLGISRDSLKSHENFKAKQEFPFELGSDADEAVCNLFSVMKMKNMYG HHHHHHHHHCCEEEEECCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH KQVRGIERSTFVIDLNGVLRREWRGVKVPGHVQEVLDFVKTL HHHCCCCCCEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12704232 [H]