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The map label for this gene is ydeM [H]

Identifier: 71906830

GI number: 71906830

Start: 1296487

End: 1296936

Strand: Reverse

Name: ydeM [H]

Synonym: Daro_1191

Alternate gene names: 71906830

Gene position: 1296936-1296487 (Counterclockwise)

Preceding gene: 71906831

Following gene: 71906829

Centisome position: 28.81

GC content: 62.44

Gene sequence:

>450_bases
ATGGACACCCGTTTTCTCGACGACCTTACTCCCGGCCAGCGCTTCACTTCGCCGGGCCTGACGCTGAGCGAAGCCGAGAT
CATCGACTTCGCGTGGCGCTACGACCCGCAGCCCTTCCATCTTGACGCCAACGCAGCAGCCAACTCGCCGTATGGCGGGC
TGATCGCCAGCGGTTTCCAGAGCCTGGCCATCTGTTTCCGGCTGTTCATCCAGTCCGGCGTGCTGGCCGAGTCGAGCATG
GGGTCGCCGGGCATCGACGAGTTGCGCTGGCTGGCGCCGGTACGACCCGGTGATACGCTGCATAGCGAGATCGAAGTGCT
GGAAGTCCGTCCTTCGAGTTCGAAACCGGATCGTGGCATTGCGCGATTGAAATATCAGGCGGTGAACCAGCGTGGCGAGG
CGGTGCTGAGCTTCATCGTCATTCACCTGCTGCGCCGGAAAAAGCCCTGA

Upstream 100 bases:

>100_bases
CCCTGCGGCAAGGCCGGCGATACGCAGCTTGCGCAGTGCCGGAACCCGTAAAGCAAGCACGACATCAGAAGCAGCCTCCA
CAAGGAAAGGACTGAACGCC

Downstream 100 bases:

>100_bases
GACGGCCGGGTGCCGGTTTCAATGTTGACCATTTTTTCTGGTGGGCTGTAGAAGTCGTCAGGCCCGACCAAACTTTATCC
GACCGGAAATATCACGATGG

Product: MaoC-like dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MDTRFLDDLTPGQRFTSPGLTLSEAEIIDFAWRYDPQPFHLDANAAANSPYGGLIASGFQSLAICFRLFIQSGVLAESSM
GSPGIDELRWLAPVRPGDTLHSEIEVLEVRPSSSKPDRGIARLKYQAVNQRGEAVLSFIVIHLLRRKKP

Sequences:

>Translated_149_residues
MDTRFLDDLTPGQRFTSPGLTLSEAEIIDFAWRYDPQPFHLDANAAANSPYGGLIASGFQSLAICFRLFIQSGVLAESSM
GSPGIDELRWLAPVRPGDTLHSEIEVLEVRPSSSKPDRGIARLKYQAVNQRGEAVLSFIVIHLLRRKKP
>Mature_149_residues
MDTRFLDDLTPGQRFTSPGLTLSEAEIIDFAWRYDPQPFHLDANAAANSPYGGLIASGFQSLAICFRLFIQSGVLAESSM
GSPGIDELRWLAPVRPGDTLHSEIEVLEVRPSSSKPDRGIARLKYQAVNQRGEAVLSFIVIHLLRRKKP

Specific function: Phenylacetic acid aerobic catabolism. [C]

COG id: COG2030

COG function: function code I; Acyl dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787653, Length=149, Percent_Identity=26.8456375838926, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002539 [H]

Pfam domain/function: PF01575 MaoC_dehydratas [H]

EC number: NA

Molecular weight: Translated: 16495; Mature: 16495

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTRFLDDLTPGQRFTSPGLTLSEAEIIDFAWRYDPQPFHLDANAAANSPYGGLIASGFQ
CCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHH
SLAICFRLFIQSGVLAESSMGSPGIDELRWLAPVRPGDTLHSEIEVLEVRPSSSKPDRGI
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHCCEEEEEECCCCCCCCCHH
ARLKYQAVNQRGEAVLSFIVIHLLRRKKP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDTRFLDDLTPGQRFTSPGLTLSEAEIIDFAWRYDPQPFHLDANAAANSPYGGLIASGFQ
CCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHH
SLAICFRLFIQSGVLAESSMGSPGIDELRWLAPVRPGDTLHSEIEVLEVRPSSSKPDRGI
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHCCEEEEEECCCCCCCCCHH
ARLKYQAVNQRGEAVLSFIVIHLLRRKKP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]