| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is 71906710
Identifier: 71906710
GI number: 71906710
Start: 1173541
End: 1176216
Strand: Reverse
Name: 71906710
Synonym: Daro_1071
Alternate gene names: NA
Gene position: 1176216-1173541 (Counterclockwise)
Preceding gene: 71906711
Following gene: 71906708
Centisome position: 26.13
GC content: 53.33
Gene sequence:
>2676_bases ATGAGAAAACGCAAGAAGTCGTATGCCAAGGCCGACTTGAGTTATCTATCTCGCTTTATGGGGGCTCTTGTCCCAGACCA GAAGCGCCTGGGGGAAATCCAGGCTGTCTATGACAACCTGACTTTGCTTGGTCAGTTGCTCGGGGCAGGTACGGATATCA GCAGCATGCGCCAGGATTTTCAGCACTTGGCGACTGTTCTCCTGGAGCAACTCGCCAAGGAGCACTACAAAAAAGCCGCG CTCAATCTCGGTTCATGTGCGCGGGTGGCCATTGATGTGCTCACGCGCAATCTGTTTGAGCGAACTGCTGACATCGGATT CTTGGCGACTGACACTCAAATTTGCTCATTCGCCGAGGCGGTTGAGGCAAATCCCGAGGTCAAGAACGACCCCGGTTGGC GGTTAGAGCTTCAGAAGCACTTTGCAGAGTACGTCAGTAAATATTCGGTCTATCACAACATCATTCTATTGTCGCCCACC GGCGAAGTTCTGGTTCAGCTTGAAGGTAACAATCCGGTGACCCAGACAACGGACCGATTGCTGGATGACGCATTAACGAC AACCGAGGGATATATCGAAGTATCTCGGCCGGTCGACCTGCTTCCCAACGACGCGACTCCCCTGATTTACGCGTACCGGG TCATGTCGAGCGATGGTAGTCACCCGGTCGGCGTGCTGTGTCTGTGTTTTAAATTTCAGGACGAGTGCCAACGAATCTTT GAGAGTCTGGTTGCTGAAGATGACTGGAGCGTTTTAACGCTGCTCGACGCCAACAACACGGTTATTTCAAGTAGTGACCC CTACCAGTTTCCTGTGGGAGCCCGTCTGGAACCCATTGCTGACGATGCCTGCCACATCATTCGCTTTAGTGGCCGCGAAT ACCTCGCCACCTCGCGTAAAGCGCACCCGTATCAAGGCTATGCGGGACCTGGCTGGGTTGGGCACGCGTTGGCCCCGCTC AATCATGCCTTCGACATATCTGAATCGTTGGAGCTGGAAGGCGTTTCAGAAGACTACATTCAGAGCGTACTCGACGTCTC GACGCTGTTTACCCATGAACTGCGTAATATCCCCGTCCGGGCGGAAACTATCCAACAGGAACTCAATCGGGCCGTATGGA ACGGGAATATTTGGCTGGCCCGGGATAACAATGCGCATAACTCGGAGTTTGCCAAGGTGCTTCTACGTGAAATAGGGAGC ACCGGTGCCCATACGCGTGATGTGTTTAGCGAAGCGACCGCCAATTTATACAAGACAGTCATTTCATCCGTACTGTTCGA TTGCGGAACGCAGGCTGCACTTGCTATCGACATCATGGACCGCAATCTCTACGAGCGCGCTAACGATTGCCGGTGGTGGG CACTGACCAAAGAGTTCCGGCACGAACTGGCTTGCGTCGACCTTGCGGATTCAGAACAGCAGAAGCGCCTGAGGGATATC CTGCGGCGCATCAACTCCCTGTATACGGTTTACAGCAACATGGTCCTTTTTGACCGAAGCGGTCGCGTAGTCGCTCTTTC CAATCCGGCCTATAACGACTGGATAGGGAAGCCAGTGAACGAAAGTTGGGTGCGTGAGACGCTGGGGCTCAAGGAAGCGC AACTTTATTCAGTATCCGATTTCGCGAATAGCGAGTTGTATGCAGGCCATCCTACTTATGTCTTCACCGCCGCCGTGCGA GCGCCGCAAAGTAGTGAACCGGTCGGGGGTATCGCGATTGTGTTCGACTCAACTTCACAATTTAAAGCGATGCTGGACGA CGTATTGCCAAGACAAGAAAACGGTGACTTGGTCGAAGGGGCCTTTGCGGTATTTGCCGAAGGTGATGGCAAAGTTGTTG CCAGCACCCATCCGGAAATTGTGCCCTGCACCCGACTGGAAATTGGACGTGAATTCTTGACCATTCAGCCGGGTGACGGT GTCACCAAGATAGTCGAGCATCATGGCAAATACTACGCTGTGGGGTCCTGCATGAGCGCTGGCTATAGGGAATACAGTGC GACCGGCACAGGCAAATCAGTCGGCGTCGTTGCCCTTGTCTTTACGCCGCTGTCGGACAGCATTGCCACTGAACAGCGAC GGCCACCACTACGCGCATCCAATAATCGCCTCAGGACAGTGCCAACCCGCGGCGTCGAAACGGTGGATATTGCGAGTTTT TATATTGGTCAAAGCTGGTACGGTCTAAAGCCGTCCTCTGTTATTGCTGCTGTCGATGCCGAACGTTTGACCCCCATGCC AGGAACGTCAGAGTTTGTAGCGGGCTGCTTGATGTTCGACGAACGGGCCATTTCGGTATTTGACCTCTCTTCGATACTAA GCCCCGTCAGGCCGGATGAAGAACGGCGGAAACTGCGAAGTAGCACAGGAAAGCGCCAGATTCTTATCTTGAACTCGCAG CATTACCAGACGCAATTTGGAATTCTGGTGGACAATCTCGCTGAAATCACCGAAATCGCTTCGCATCGCATCGAGCCCGT ACCCGGCATGATGTCGGATGGGAATTCGCTAATTGATAGTCTCGTCAAGCCAATGGAAAATGATGCTGAGCGGAGAATTC TCATCGTTCTCTCCACAGAAAAACTCGCGAAGCGCTTTGCGGCGCCTGCTGCGATTACAGTGACGCCTGTGCATCACTCT GTCGATTCATTGCAGCGAATTTGCGCTATAGCTTAG
Upstream 100 bases:
>100_bases CGCTTTACTGTCATGTGCTTAGAATGCATTTGCCAGGTCTGGCACTTCTCTTGCTGAATTCAAGGTAACCAGAATTGAAA TTGCAGAGGAACAAGCCAAT
Downstream 100 bases:
>100_bases GCGAGGTATTGTTAGTTGGATTTGAGGTCAGAAAGGCGGCTACAAGCCGCCTTTCTTGCGCAAAGACTCAAGGCCACAGC TAACGCCTTACCCTCGTCGC
Product: CheW protein
Products: NA
Alternate protein names: Methyl-Accepting Chemotaxis Sensory Transducer; Methyl-Accepting Chemotaxis Protein; Chemotaxis Sensory Transducer; Chew Domain Protein; Methyl-Accepting Chemotaxis-Related Protein; CheW-Like Chemotaxis Protein
Number of amino acids: Translated: 891; Mature: 891
Protein sequence:
>891_residues MRKRKKSYAKADLSYLSRFMGALVPDQKRLGEIQAVYDNLTLLGQLLGAGTDISSMRQDFQHLATVLLEQLAKEHYKKAA LNLGSCARVAIDVLTRNLFERTADIGFLATDTQICSFAEAVEANPEVKNDPGWRLELQKHFAEYVSKYSVYHNIILLSPT GEVLVQLEGNNPVTQTTDRLLDDALTTTEGYIEVSRPVDLLPNDATPLIYAYRVMSSDGSHPVGVLCLCFKFQDECQRIF ESLVAEDDWSVLTLLDANNTVISSSDPYQFPVGARLEPIADDACHIIRFSGREYLATSRKAHPYQGYAGPGWVGHALAPL NHAFDISESLELEGVSEDYIQSVLDVSTLFTHELRNIPVRAETIQQELNRAVWNGNIWLARDNNAHNSEFAKVLLREIGS TGAHTRDVFSEATANLYKTVISSVLFDCGTQAALAIDIMDRNLYERANDCRWWALTKEFRHELACVDLADSEQQKRLRDI LRRINSLYTVYSNMVLFDRSGRVVALSNPAYNDWIGKPVNESWVRETLGLKEAQLYSVSDFANSELYAGHPTYVFTAAVR APQSSEPVGGIAIVFDSTSQFKAMLDDVLPRQENGDLVEGAFAVFAEGDGKVVASTHPEIVPCTRLEIGREFLTIQPGDG VTKIVEHHGKYYAVGSCMSAGYREYSATGTGKSVGVVALVFTPLSDSIATEQRRPPLRASNNRLRTVPTRGVETVDIASF YIGQSWYGLKPSSVIAAVDAERLTPMPGTSEFVAGCLMFDERAISVFDLSSILSPVRPDEERRKLRSSTGKRQILILNSQ HYQTQFGILVDNLAEITEIASHRIEPVPGMMSDGNSLIDSLVKPMENDAERRILIVLSTEKLAKRFAAPAAITVTPVHHS VDSLQRICAIA
Sequences:
>Translated_891_residues MRKRKKSYAKADLSYLSRFMGALVPDQKRLGEIQAVYDNLTLLGQLLGAGTDISSMRQDFQHLATVLLEQLAKEHYKKAA LNLGSCARVAIDVLTRNLFERTADIGFLATDTQICSFAEAVEANPEVKNDPGWRLELQKHFAEYVSKYSVYHNIILLSPT GEVLVQLEGNNPVTQTTDRLLDDALTTTEGYIEVSRPVDLLPNDATPLIYAYRVMSSDGSHPVGVLCLCFKFQDECQRIF ESLVAEDDWSVLTLLDANNTVISSSDPYQFPVGARLEPIADDACHIIRFSGREYLATSRKAHPYQGYAGPGWVGHALAPL NHAFDISESLELEGVSEDYIQSVLDVSTLFTHELRNIPVRAETIQQELNRAVWNGNIWLARDNNAHNSEFAKVLLREIGS TGAHTRDVFSEATANLYKTVISSVLFDCGTQAALAIDIMDRNLYERANDCRWWALTKEFRHELACVDLADSEQQKRLRDI LRRINSLYTVYSNMVLFDRSGRVVALSNPAYNDWIGKPVNESWVRETLGLKEAQLYSVSDFANSELYAGHPTYVFTAAVR APQSSEPVGGIAIVFDSTSQFKAMLDDVLPRQENGDLVEGAFAVFAEGDGKVVASTHPEIVPCTRLEIGREFLTIQPGDG VTKIVEHHGKYYAVGSCMSAGYREYSATGTGKSVGVVALVFTPLSDSIATEQRRPPLRASNNRLRTVPTRGVETVDIASF YIGQSWYGLKPSSVIAAVDAERLTPMPGTSEFVAGCLMFDERAISVFDLSSILSPVRPDEERRKLRSSTGKRQILILNSQ HYQTQFGILVDNLAEITEIASHRIEPVPGMMSDGNSLIDSLVKPMENDAERRILIVLSTEKLAKRFAAPAAITVTPVHHS VDSLQRICAIA >Mature_891_residues MRKRKKSYAKADLSYLSRFMGALVPDQKRLGEIQAVYDNLTLLGQLLGAGTDISSMRQDFQHLATVLLEQLAKEHYKKAA LNLGSCARVAIDVLTRNLFERTADIGFLATDTQICSFAEAVEANPEVKNDPGWRLELQKHFAEYVSKYSVYHNIILLSPT GEVLVQLEGNNPVTQTTDRLLDDALTTTEGYIEVSRPVDLLPNDATPLIYAYRVMSSDGSHPVGVLCLCFKFQDECQRIF ESLVAEDDWSVLTLLDANNTVISSSDPYQFPVGARLEPIADDACHIIRFSGREYLATSRKAHPYQGYAGPGWVGHALAPL NHAFDISESLELEGVSEDYIQSVLDVSTLFTHELRNIPVRAETIQQELNRAVWNGNIWLARDNNAHNSEFAKVLLREIGS TGAHTRDVFSEATANLYKTVISSVLFDCGTQAALAIDIMDRNLYERANDCRWWALTKEFRHELACVDLADSEQQKRLRDI LRRINSLYTVYSNMVLFDRSGRVVALSNPAYNDWIGKPVNESWVRETLGLKEAQLYSVSDFANSELYAGHPTYVFTAAVR APQSSEPVGGIAIVFDSTSQFKAMLDDVLPRQENGDLVEGAFAVFAEGDGKVVASTHPEIVPCTRLEIGREFLTIQPGDG VTKIVEHHGKYYAVGSCMSAGYREYSATGTGKSVGVVALVFTPLSDSIATEQRRPPLRASNNRLRTVPTRGVETVDIASF YIGQSWYGLKPSSVIAAVDAERLTPMPGTSEFVAGCLMFDERAISVFDLSSILSPVRPDEERRKLRSSTGKRQILILNSQ HYQTQFGILVDNLAEITEIASHRIEPVPGMMSDGNSLIDSLVKPMENDAERRILIVLSTEKLAKRFAAPAAITVTPVHHS VDSLQRICAIA
Specific function: Unknown
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98760; Mature: 98760
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS50851 CHEW
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKRKKSYAKADLSYLSRFMGALVPDQKRLGEIQAVYDNLTLLGQLLGAGTDISSMRQDF CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH QHLATVLLEQLAKEHYKKAALNLGSCARVAIDVLTRNLFERTADIGFLATDTQICSFAEA HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHH VEANPEVKNDPGWRLELQKHFAEYVSKYSVYHNIILLSPTGEVLVQLEGNNPVTQTTDRL HCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCCHHHHHHH LDDALTTTEGYIEVSRPVDLLPNDATPLIYAYRVMSSDGSHPVGVLCLCFKFQDECQRIF HHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH ESLVAEDDWSVLTLLDANNTVISSSDPYQFPVGARLEPIADDACHIIRFSGREYLATSRK HHHHCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCC AHPYQGYAGPGWVGHALAPLNHAFDISESLELEGVSEDYIQSVLDVSTLFTHELRNIPVR CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH AETIQQELNRAVWNGNIWLARDNNAHNSEFAKVLLREIGSTGAHTRDVFSEATANLYKTV HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH ISSVLFDCGTQAALAIDIMDRNLYERANDCRWWALTKEFRHELACVDLADSEQQKRLRDI HHHHHHHCCCCCEEEEEEHHHHHHHHCCCCEEEHCCHHHHHHEEEEECCCCHHHHHHHHH LRRINSLYTVYSNMVLFDRSGRVVALSNPAYNDWIGKPVNESWVRETLGLKEAQLYSVSD HHHHHHHHHHHHCEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHEEEEHH FANSELYAGHPTYVFTAAVRAPQSSEPVGGIAIVFDSTSQFKAMLDDVLPRQENGDLVEG CCCCCEECCCCCEEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCEEEC AFAVFAEGDGKVVASTHPEIVPCTRLEIGREFLTIQPGDGVTKIVEHHGKYYAVGSCMSA EEEEEECCCCEEEECCCCCEEECHHHHCCCEEEEEECCCCHHHHHHHCCCEEEEHHHHHC GYREYSATGTGKSVGVVALVFTPLSDSIATEQRRPPLRASNNRLRTVPTRGVETVDIASF CCHHHCCCCCCCCCEEEEEEEECCCHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEHHHH YIGQSWYGLKPSSVIAAVDAERLTPMPGTSEFVAGCLMFDERAISVFDLSSILSPVRPDE HHCCCCCCCCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHCCCHHHEEHHHHHCCCCCCH ERRKLRSSTGKRQILILNSQHYQTQFGILVDNLAEITEIASHRIEPVPGMMSDGNSLIDS HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH LVKPMENDAERRILIVLSTEKLAKRFAAPAAITVTPVHHSVDSLQRICAIA HHHHHCCCCCCEEEEEEECHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCC >Mature Secondary Structure MRKRKKSYAKADLSYLSRFMGALVPDQKRLGEIQAVYDNLTLLGQLLGAGTDISSMRQDF CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH QHLATVLLEQLAKEHYKKAALNLGSCARVAIDVLTRNLFERTADIGFLATDTQICSFAEA HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHH VEANPEVKNDPGWRLELQKHFAEYVSKYSVYHNIILLSPTGEVLVQLEGNNPVTQTTDRL HCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCCHHHHHHH LDDALTTTEGYIEVSRPVDLLPNDATPLIYAYRVMSSDGSHPVGVLCLCFKFQDECQRIF HHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH ESLVAEDDWSVLTLLDANNTVISSSDPYQFPVGARLEPIADDACHIIRFSGREYLATSRK HHHHCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCC AHPYQGYAGPGWVGHALAPLNHAFDISESLELEGVSEDYIQSVLDVSTLFTHELRNIPVR CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH AETIQQELNRAVWNGNIWLARDNNAHNSEFAKVLLREIGSTGAHTRDVFSEATANLYKTV HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH ISSVLFDCGTQAALAIDIMDRNLYERANDCRWWALTKEFRHELACVDLADSEQQKRLRDI HHHHHHHCCCCCEEEEEEHHHHHHHHCCCCEEEHCCHHHHHHEEEEECCCCHHHHHHHHH LRRINSLYTVYSNMVLFDRSGRVVALSNPAYNDWIGKPVNESWVRETLGLKEAQLYSVSD HHHHHHHHHHHHCEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHEEEEHH FANSELYAGHPTYVFTAAVRAPQSSEPVGGIAIVFDSTSQFKAMLDDVLPRQENGDLVEG CCCCCEECCCCCEEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCEEEC AFAVFAEGDGKVVASTHPEIVPCTRLEIGREFLTIQPGDGVTKIVEHHGKYYAVGSCMSA EEEEEECCCCEEEECCCCCEEECHHHHCCCEEEEEECCCCHHHHHHHCCCEEEEHHHHHC GYREYSATGTGKSVGVVALVFTPLSDSIATEQRRPPLRASNNRLRTVPTRGVETVDIASF CCHHHCCCCCCCCCEEEEEEEECCCHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEHHHH YIGQSWYGLKPSSVIAAVDAERLTPMPGTSEFVAGCLMFDERAISVFDLSSILSPVRPDE HHCCCCCCCCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHCCCHHHEEHHHHHCCCCCCH ERRKLRSSTGKRQILILNSQHYQTQFGILVDNLAEITEIASHRIEPVPGMMSDGNSLIDS HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH LVKPMENDAERRILIVLSTEKLAKRFAAPAAITVTPVHHSVDSLQRICAIA HHHHHCCCCCCEEEEEEECHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA