Click here to switch to the map view.

The map label for this gene is stc [H]

Identifier: 71906656

GI number: 71906656

Start: 1113392

End: 1115431

Strand: Reverse

Name: stc [H]

Synonym: Daro_1017

Alternate gene names: 71906656

Gene position: 1115431-1113392 (Counterclockwise)

Preceding gene: 71906661

Following gene: 71906654

Centisome position: 24.78

GC content: 62.35

Gene sequence:

>2040_bases
TTGTTTTTCCATAAATACCCCGGAGCCCGCCACGAGCCCAATGTGACTGCCAACAGCAATTTTCTTATTCCACGAATCGG
CGACGAGTCGGCTGTAGCCCGTTCATGGGAACGATTCCTTGAGAACCGGCCATTGCCCGGTGTTGGCGTGCGCAATGTGG
TACTCGACTCCTGGCGGCGCAGCCGTTCGGAGTCCGTCGATCCAGGCATCGGCAGTGCCCCGACGGCTAATGGCGACAAG
ATTCACCAGTTGCGGGCGCGCTCCCATGATCTATATGAGGCGGCCAAGCCGGTGCTCGAAACCCTGCGCGAAATCCTGCG
CGAATCAGGCACACTGATCATGCTCAGTGACCCAAGCGGGACCATTCTCGACCTCAATGGCGAATCCCGCGCCCGCGATG
CGGGCGAGCAGATCAACCTGGCACCAGGCGGTTGCTGGAGCGAAGACCTGATCGGCACCAATGCCATCGGTACGACCATT
GCCACGCATCAGGCCGTGCAAATCTACGCCAGCGAACACTACTGCATCGATGTCAAGCACTGGACCTGTGCCGCTGCCCC
CATCCTCGACCCGCTGGGCAGGAACCTGCTCGGCGTCGTCGATGTTTCCGGCGTCAAGGAGACCTTTCACGGACATACGC
TGGGCCTGGTCATCTCGGCGGCCAAACAGATCGAAGGCATCCTGGCCCGCCGCGACGCGGAACAGCATGGCCGTCTGCTC
GAACACGCCACGGACAGTTTCAGCCGTTATGGCAACGATTGTGTGGTGTTGTTTGATCAGCGCGGTCGTATCGTCAAGAC
CTGCGGCTGCATGCAACAGGCCCGCAAGATGTACGGTGTGCGCCTGCCTTTCGAGGTTGGCAGCCAGGTCACCGCCCTCG
ACTTCGCCGTGCATCCCGACGAGCGCCTGAGCCAGACGCCGCTCTGGCTACGCCCGGAATGGCTGCACCCGGTACGTTCC
CGCGATGGTGACCTCGGCACCCTGCTGGTCATCCCCATCGGCACATCGGCACGACAATCAGTCAGCATCCCGCCCCCGGC
GACCAGGACGACGGATGAGGTCTTCGCTGAAATCATCGGCACCAGCCAGGCCATTTCGACAGCAAAAGCCCGCGCCAAAA
GAATCGCACCACTCGATCTGCCCGTCCTCTTGCTCGGTGAAACCGGCGCCGGCAAGGAGGTTTTCGCGCGCGCCATCCAC
AAGGCGAGCAGCAAACCGGAAGGGCCTTTCATCGCTGTCAATTGCGGCGCCCTGACCCGCGAACTGCTGGCCAGCGAATT
GTTCGGCTATAGCGAAGGCGCATTTACCGGCGCCCGTCGCGGTGGGCTGCCCGGCAAGTTCGAACAGGCTGACGGCGGCA
CCCTGTTTCTCGATGAAATCGGCGAAATGCCGCTCGACATGCAACCTCATCTGCTACGTGTGCTGCAGGACGGCGTGGTC
GTCCGGCTCGGCGACACCAAGGAACGCAAAGTGGCAGTGCGCATCATTGCCGCGACCAATCGCGACCTGCAAGCGGATTC
CAGCACCGGCCGTTTCCGCGAAGATCTTTTCCACCGGCTCTGCGTCGTCAGCCTGCTCCTGCCGCCCTTGCGCGAGCGCC
CAGAGGATACCGAAGCGATCATCGGCCATCTCAACCAGCGCTTGGCCCGCAAATACGGCTGCCCGCCGAAGAGCCTGGCC
CCCGAAGTCCTGCACCATCTGCTGCGCTATCGCTGGCCGGGAAATATCCGCGAATTGCAAAATGTGTTCGAAGCCATGTT
TGCGCTAAGCGATAGCAACCGCATCGATGGCAGCCTGCTCCCGCCGCATATAGCCGCTGCCGCAGTCGATGCGGTGCTGG
CGCGCGGTGAGGTAACGCAGGCCATGGCAGCCGGTCGCCTGGCCGAAATGGAGCGGGCCGCAATCAATGCCGCCGTGGCC
AACAGCCACGGCAACCTGTCGATGGCGGCCCGAAACCTGGGGATTTCACGCAGCACGCTCTACGTGAAGCTGGCCGCCAT
GCGTGAGGTACCGACAGCAGGATCGCTGTCGTTATCGTAG

Upstream 100 bases:

>100_bases
ACTTCACAAGTTATTTGCTGCGGCGCACAACCCATTGATCTACAACGATTTTATTGACTTGAAATCCATCGTCGGCTACG
GTTATGATTAGGTTGATTTA

Downstream 100 bases:

>100_bases
GGGTGAGTAACGCGTTCTGAATTTCAGCCATTCGAGCGTCTGCTTAGCGACAAATATCAGCCCTGTTCAGCGGCGAGATC
GATCAGCTGCATCTGCAGCA

Product: helix-turn-helix, Fis-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 679; Mature: 679

Protein sequence:

>679_residues
MFFHKYPGARHEPNVTANSNFLIPRIGDESAVARSWERFLENRPLPGVGVRNVVLDSWRRSRSESVDPGIGSAPTANGDK
IHQLRARSHDLYEAAKPVLETLREILRESGTLIMLSDPSGTILDLNGESRARDAGEQINLAPGGCWSEDLIGTNAIGTTI
ATHQAVQIYASEHYCIDVKHWTCAAAPILDPLGRNLLGVVDVSGVKETFHGHTLGLVISAAKQIEGILARRDAEQHGRLL
EHATDSFSRYGNDCVVLFDQRGRIVKTCGCMQQARKMYGVRLPFEVGSQVTALDFAVHPDERLSQTPLWLRPEWLHPVRS
RDGDLGTLLVIPIGTSARQSVSIPPPATRTTDEVFAEIIGTSQAISTAKARAKRIAPLDLPVLLLGETGAGKEVFARAIH
KASSKPEGPFIAVNCGALTRELLASELFGYSEGAFTGARRGGLPGKFEQADGGTLFLDEIGEMPLDMQPHLLRVLQDGVV
VRLGDTKERKVAVRIIAATNRDLQADSSTGRFREDLFHRLCVVSLLLPPLRERPEDTEAIIGHLNQRLARKYGCPPKSLA
PEVLHHLLRYRWPGNIRELQNVFEAMFALSDSNRIDGSLLPPHIAAAAVDAVLARGEVTQAMAAGRLAEMERAAINAAVA
NSHGNLSMAARNLGISRSTLYVKLAAMREVPTAGSLSLS

Sequences:

>Translated_679_residues
MFFHKYPGARHEPNVTANSNFLIPRIGDESAVARSWERFLENRPLPGVGVRNVVLDSWRRSRSESVDPGIGSAPTANGDK
IHQLRARSHDLYEAAKPVLETLREILRESGTLIMLSDPSGTILDLNGESRARDAGEQINLAPGGCWSEDLIGTNAIGTTI
ATHQAVQIYASEHYCIDVKHWTCAAAPILDPLGRNLLGVVDVSGVKETFHGHTLGLVISAAKQIEGILARRDAEQHGRLL
EHATDSFSRYGNDCVVLFDQRGRIVKTCGCMQQARKMYGVRLPFEVGSQVTALDFAVHPDERLSQTPLWLRPEWLHPVRS
RDGDLGTLLVIPIGTSARQSVSIPPPATRTTDEVFAEIIGTSQAISTAKARAKRIAPLDLPVLLLGETGAGKEVFARAIH
KASSKPEGPFIAVNCGALTRELLASELFGYSEGAFTGARRGGLPGKFEQADGGTLFLDEIGEMPLDMQPHLLRVLQDGVV
VRLGDTKERKVAVRIIAATNRDLQADSSTGRFREDLFHRLCVVSLLLPPLRERPEDTEAIIGHLNQRLARKYGCPPKSLA
PEVLHHLLRYRWPGNIRELQNVFEAMFALSDSNRIDGSLLPPHIAAAAVDAVLARGEVTQAMAAGRLAEMERAAINAAVA
NSHGNLSMAARNLGISRSTLYVKLAAMREVPTAGSLSLS
>Mature_679_residues
MFFHKYPGARHEPNVTANSNFLIPRIGDESAVARSWERFLENRPLPGVGVRNVVLDSWRRSRSESVDPGIGSAPTANGDK
IHQLRARSHDLYEAAKPVLETLREILRESGTLIMLSDPSGTILDLNGESRARDAGEQINLAPGGCWSEDLIGTNAIGTTI
ATHQAVQIYASEHYCIDVKHWTCAAAPILDPLGRNLLGVVDVSGVKETFHGHTLGLVISAAKQIEGILARRDAEQHGRLL
EHATDSFSRYGNDCVVLFDQRGRIVKTCGCMQQARKMYGVRLPFEVGSQVTALDFAVHPDERLSQTPLWLRPEWLHPVRS
RDGDLGTLLVIPIGTSARQSVSIPPPATRTTDEVFAEIIGTSQAISTAKARAKRIAPLDLPVLLLGETGAGKEVFARAIH
KASSKPEGPFIAVNCGALTRELLASELFGYSEGAFTGARRGGLPGKFEQADGGTLFLDEIGEMPLDMQPHLLRVLQDGVV
VRLGDTKERKVAVRIIAATNRDLQADSSTGRFREDLFHRLCVVSLLLPPLRERPEDTEAIIGHLNQRLARKYGCPPKSLA
PEVLHHLLRYRWPGNIRELQNVFEAMFALSDSNRIDGSLLPPHIAAAAVDAVLARGEVTQAMAAGRLAEMERAAINAAVA
NSHGNLSMAARNLGISRSTLYVKLAAMREVPTAGSLSLS

Specific function: Unknown

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=315, Percent_Identity=42.2222222222222, Blast_Score=236, Evalue=5e-63,
Organism=Escherichia coli, GI1790437, Length=310, Percent_Identity=43.2258064516129, Blast_Score=234, Evalue=2e-62,
Organism=Escherichia coli, GI1788550, Length=322, Percent_Identity=43.4782608695652, Blast_Score=227, Evalue=2e-60,
Organism=Escherichia coli, GI87082117, Length=332, Percent_Identity=41.2650602409639, Blast_Score=223, Evalue=4e-59,
Organism=Escherichia coli, GI1790299, Length=331, Percent_Identity=40.785498489426, Blast_Score=222, Evalue=7e-59,
Organism=Escherichia coli, GI1789087, Length=322, Percent_Identity=41.6149068322981, Blast_Score=220, Evalue=3e-58,
Organism=Escherichia coli, GI1788905, Length=318, Percent_Identity=41.1949685534591, Blast_Score=211, Evalue=8e-56,
Organism=Escherichia coli, GI87082152, Length=319, Percent_Identity=39.8119122257053, Blast_Score=202, Evalue=6e-53,
Organism=Escherichia coli, GI1786524, Length=328, Percent_Identity=40.8536585365854, Blast_Score=199, Evalue=7e-52,
Organism=Escherichia coli, GI87081872, Length=228, Percent_Identity=45.1754385964912, Blast_Score=193, Evalue=3e-50,
Organism=Escherichia coli, GI1787583, Length=315, Percent_Identity=37.7777777777778, Blast_Score=186, Evalue=4e-48,
Organism=Escherichia coli, GI87081858, Length=632, Percent_Identity=26.7405063291139, Blast_Score=173, Evalue=3e-44,
Organism=Escherichia coli, GI1789828, Length=233, Percent_Identity=36.0515021459227, Blast_Score=126, Evalue=5e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 73873; Mature: 73873

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFHKYPGARHEPNVTANSNFLIPRIGDESAVARSWERFLENRPLPGVGVRNVVLDSWRR
CCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
SRSESVDPGIGSAPTANGDKIHQLRARSHDLYEAAKPVLETLREILRESGTLIMLSDPSG
HCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
TILDLNGESRARDAGEQINLAPGGCWSEDLIGTNAIGTTIATHQAVQIYASEHYCIDVKH
CEEECCCCCHHHCCCCEEECCCCCCCCHHCCCCCCHHHHHHHCCEEEEEECCEEEEEECC
WTCAAAPILDPLGRNLLGVVDVSGVKETFHGHTLGLVISAAKQIEGILARRDAEQHGRLL
CCCHHHHHHHHHCCCEEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
EHATDSFSRYGNDCVVLFDQRGRIVKTCGCMQQARKMYGVRLPFEVGSQVTALDFAVHPD
HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEEECCH
ERLSQTPLWLRPEWLHPVRSRDGDLGTLLVIPIGTSARQSVSIPPPATRTTDEVFAEIIG
HHHCCCCCEECHHHHCHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHC
TSQAISTAKARAKRIAPLDLPVLLLGETGAGKEVFARAIHKASSKPEGPFIAVNCGALTR
CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECHHHHH
ELLASELFGYSEGAFTGARRGGLPGKFEQADGGTLFLDEIGEMPLDMQPHLLRVLQDGVV
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCCCCCCCHHHHHHHHCCEE
VRLGDTKERKVAVRIIAATNRDLQADSSTGRFREDLFHRLCVVSLLLPPLRERPEDTEAI
EEECCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCHHHHH
IGHLNQRLARKYGCPPKSLAPEVLHHLLRYRWPGNIRELQNVFEAMFALSDSNRIDGSLL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
PPHIAAAAVDAVLARGEVTQAMAAGRLAEMERAAINAAVANSHGNLSMAARNLGISRSTL
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCCCCHHH
YVKLAAMREVPTAGSLSLS
EEEEEHHHCCCCCCCCCCC
>Mature Secondary Structure
MFFHKYPGARHEPNVTANSNFLIPRIGDESAVARSWERFLENRPLPGVGVRNVVLDSWRR
CCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
SRSESVDPGIGSAPTANGDKIHQLRARSHDLYEAAKPVLETLREILRESGTLIMLSDPSG
HCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
TILDLNGESRARDAGEQINLAPGGCWSEDLIGTNAIGTTIATHQAVQIYASEHYCIDVKH
CEEECCCCCHHHCCCCEEECCCCCCCCHHCCCCCCHHHHHHHCCEEEEEECCEEEEEECC
WTCAAAPILDPLGRNLLGVVDVSGVKETFHGHTLGLVISAAKQIEGILARRDAEQHGRLL
CCCHHHHHHHHHCCCEEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
EHATDSFSRYGNDCVVLFDQRGRIVKTCGCMQQARKMYGVRLPFEVGSQVTALDFAVHPD
HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEEECCH
ERLSQTPLWLRPEWLHPVRSRDGDLGTLLVIPIGTSARQSVSIPPPATRTTDEVFAEIIG
HHHCCCCCEECHHHHCHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHC
TSQAISTAKARAKRIAPLDLPVLLLGETGAGKEVFARAIHKASSKPEGPFIAVNCGALTR
CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECHHHHH
ELLASELFGYSEGAFTGARRGGLPGKFEQADGGTLFLDEIGEMPLDMQPHLLRVLQDGVV
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCCCCCCCHHHHHHHHCCEE
VRLGDTKERKVAVRIIAATNRDLQADSSTGRFREDLFHRLCVVSLLLPPLRERPEDTEAI
EEECCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCHHHHH
IGHLNQRLARKYGCPPKSLAPEVLHHLLRYRWPGNIRELQNVFEAMFALSDSNRIDGSLL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
PPHIAAAAVDAVLARGEVTQAMAAGRLAEMERAAINAAVANSHGNLSMAARNLGISRSTL
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCCCCHHH
YVKLAAMREVPTAGSLSLS
EEEEEHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA