Definition Dechloromonas aromatica RCB, complete genome.
Accession NC_007298
Length 4,501,104

Click here to switch to the map view.

The map label for this gene is 71906560

Identifier: 71906560

GI number: 71906560

Start: 997507

End: 998655

Strand: Reverse

Name: 71906560

Synonym: Daro_0921

Alternate gene names: NA

Gene position: 998655-997507 (Counterclockwise)

Preceding gene: 71906561

Following gene: 71906559

Centisome position: 22.19

GC content: 57.35

Gene sequence:

>1149_bases
ATGAAAGCGATTCGCCTTATCCTGGCAGCCTGCCTTATCGGCACCGCAGCAATCCAGCCATCCCTCGCCGAAACGGGCGT
CACCGACACGACGATCACGCTTGGCATGTCAGCCCCACTGACCGGACCGGCGAGCGGGCATGGCCAAGAACTGAAGAATG
CCATCACCGCCTATTTTGACCAGGTGAACAAGAATGGCGGCGTGAATGGGCGAAAGCTTCAGTTGGCGGTCCTGGATGAT
GGATACGAAGCCGAAAAGGCAGTCGCCAATACCAAGACACTGATCGAAACCAACAAGGTGTTCGCGCTGCTCGGTTACTA
TGGCTCGGCCTCGATAACCGAAGCCATGAACAAGGGCTTCGGCCCGGCCCGTGTTCCGATGATTGGTGGCATTTCCGGCG
CCATGGCGCTTCGCCAGCCGCCCGCTGGCAACCCGAACAATCGCTTCTTGTTCATACAGCGCGCCAGCTACGCTGACGAG
GCAGAAGCCATCGGTCTCCAACTGGCCACCCTGGGCTTGAAAAACATTGCCGTCTTTTACCAGAATGATGGCTTCGGCAA
GGCGGGTCTCGAAGGCCTGACCAATGCACTGAAGAAAAACAACCTGACCCCGTCGGCCACTGCCACGGTCGAACGCAACT
CTGAAGACATCAGCAAGGCCGTTGAAACGATCGCCAAGGTCAATCCCCAGGCGGTGGTGATGGTCACCTTGTACAAACCG
ACTGCGGCCATGGTCAAGGCGCTGCGCAAGGCCAACCAGAGTCCGATGTTCATGACCCTGTCGCCGGTTGGTCCGGACCA
ACTAACCCAGGAACTGGGCAACGATGCCCGTGGTATCGGCATTTCTCAGGTCATGCCCTTCCCTTGGAACGACACCATTG
CCATCGTCAAGGAGTACCAGCACCTGGTTGGCAAGCAGGCCACGTACTCTTACATGAGCCTTGAGGGATTCGTCATCGCG
AAGATGGCCGTTGAGGCGATCCGCAAGGCTGGCGGCAAGGAGCTCTCGCGAGAAAAACTGATCTCCACCCTTGAAGGCCT
GAATCAGGACTTTGGCGGCTATCGCATCAGCTTCAGCCCCAATAGCCATGCTGGTTCGCAATATGTCCAACTAACAGTGA
TCGGTGCTGGCGGCAAGCTGATCAAATAA

Upstream 100 bases:

>100_bases
TCATACGACAAATATCTCTATTCCATGCGCTTTTGTGACAACGGCAAGCCTTACACCCATATAATTTGAAAATAATCCAG
CACTCCATAGCGAGAAACTA

Downstream 100 bases:

>100_bases
GCAGCCGGAATTTCACCGATAAGCCGACGGGCTGTGCGCCATGCGCCAGCCCTTTTTTACGCTCACGAAATCCCCTTCGC
CCGCTGGTTTGCCGCCCCTT

Product: extracellular ligand-binding receptor

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKAIRLILAACLIGTAAIQPSLAETGVTDTTITLGMSAPLTGPASGHGQELKNAITAYFDQVNKNGGVNGRKLQLAVLDD
GYEAEKAVANTKTLIETNKVFALLGYYGSASITEAMNKGFGPARVPMIGGISGAMALRQPPAGNPNNRFLFIQRASYADE
AEAIGLQLATLGLKNIAVFYQNDGFGKAGLEGLTNALKKNNLTPSATATVERNSEDISKAVETIAKVNPQAVVMVTLYKP
TAAMVKALRKANQSPMFMTLSPVGPDQLTQELGNDARGIGISQVMPFPWNDTIAIVKEYQHLVGKQATYSYMSLEGFVIA
KMAVEAIRKAGGKELSREKLISTLEGLNQDFGGYRISFSPNSHAGSQYVQLTVIGAGGKLIK

Sequences:

>Translated_382_residues
MKAIRLILAACLIGTAAIQPSLAETGVTDTTITLGMSAPLTGPASGHGQELKNAITAYFDQVNKNGGVNGRKLQLAVLDD
GYEAEKAVANTKTLIETNKVFALLGYYGSASITEAMNKGFGPARVPMIGGISGAMALRQPPAGNPNNRFLFIQRASYADE
AEAIGLQLATLGLKNIAVFYQNDGFGKAGLEGLTNALKKNNLTPSATATVERNSEDISKAVETIAKVNPQAVVMVTLYKP
TAAMVKALRKANQSPMFMTLSPVGPDQLTQELGNDARGIGISQVMPFPWNDTIAIVKEYQHLVGKQATYSYMSLEGFVIA
KMAVEAIRKAGGKELSREKLISTLEGLNQDFGGYRISFSPNSHAGSQYVQLTVIGAGGKLIK
>Mature_382_residues
MKAIRLILAACLIGTAAIQPSLAETGVTDTTITLGMSAPLTGPASGHGQELKNAITAYFDQVNKNGGVNGRKLQLAVLDD
GYEAEKAVANTKTLIETNKVFALLGYYGSASITEAMNKGFGPARVPMIGGISGAMALRQPPAGNPNNRFLFIQRASYADE
AEAIGLQLATLGLKNIAVFYQNDGFGKAGLEGLTNALKKNNLTPSATATVERNSEDISKAVETIAKVNPQAVVMVTLYKP
TAAMVKALRKANQSPMFMTLSPVGPDQLTQELGNDARGIGISQVMPFPWNDTIAIVKEYQHLVGKQATYSYMSLEGFVIA
KMAVEAIRKAGGKELSREKLISTLEGLNQDFGGYRISFSPNSHAGSQYVQLTVIGAGGKLIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40489; Mature: 40489

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAIRLILAACLIGTAAIQPSLAETGVTDTTITLGMSAPLTGPASGHGQELKNAITAYFD
CHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
QVNKNGGVNGRKLQLAVLDDGYEAEKAVANTKTLIETNKVFALLGYYGSASITEAMNKGF
HHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHEECCCEEEEEEECCCCHHHHHHHCCC
GPARVPMIGGISGAMALRQPPAGNPNNRFLFIQRASYADEAEAIGLQLATLGLKNIAVFY
CCCCCCEECCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHEEECCCEEEEEE
QNDGFGKAGLEGLTNALKKNNLTPSATATVERNSEDISKAVETIAKVNPQAVVMVTLYKP
ECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECC
TAAMVKALRKANQSPMFMTLSPVGPDQLTQELGNDARGIGISQVMPFPWNDTIAIVKEYQ
HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHH
HLVGKQATYSYMSLEGFVIAKMAVEAIRKAGGKELSREKLISTLEGLNQDFGGYRISFSP
HHHCCCHHHHEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC
NSHAGSQYVQLTVIGAGGKLIK
CCCCCCEEEEEEEEECCCCCCC
>Mature Secondary Structure
MKAIRLILAACLIGTAAIQPSLAETGVTDTTITLGMSAPLTGPASGHGQELKNAITAYFD
CHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
QVNKNGGVNGRKLQLAVLDDGYEAEKAVANTKTLIETNKVFALLGYYGSASITEAMNKGF
HHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHEECCCEEEEEEECCCCHHHHHHHCCC
GPARVPMIGGISGAMALRQPPAGNPNNRFLFIQRASYADEAEAIGLQLATLGLKNIAVFY
CCCCCCEECCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHEEECCCEEEEEE
QNDGFGKAGLEGLTNALKKNNLTPSATATVERNSEDISKAVETIAKVNPQAVVMVTLYKP
ECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECC
TAAMVKALRKANQSPMFMTLSPVGPDQLTQELGNDARGIGISQVMPFPWNDTIAIVKEYQ
HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHH
HLVGKQATYSYMSLEGFVIAKMAVEAIRKAGGKELSREKLISTLEGLNQDFGGYRISFSP
HHHCCCHHHHEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC
NSHAGSQYVQLTVIGAGGKLIK
CCCCCCEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA