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The map label for this gene is yedY [H]

Identifier: 71906261

GI number: 71906261

Start: 687165

End: 688118

Strand: Reverse

Name: yedY [H]

Synonym: Daro_0621

Alternate gene names: 71906261

Gene position: 688118-687165 (Counterclockwise)

Preceding gene: 71906262

Following gene: 71906260

Centisome position: 15.29

GC content: 58.39

Gene sequence:

>954_bases
ATGCTGATTCGTCGCCCCGCCGCCCTCCCTGCCTCTGAAATCACAGATTCGGCAATTTATGCCAGCCGCCGAGACTTCAT
TCGGACGCTGCTGCTCGGCGCCGGTACCGCTGGATTCGGCCTGAGCTACGGCGCTGACGCTGGCGATCGGACCGGTCAGT
CTTTGGGAAGCCTGATCAACAGTCCCTTTTCGTTGCATGACGACAAGCCCACCCCCTTCAAGTCGATGACCAGCTACGGG
AATTTCTACGAGTTCGGCCCGGACAAGGAAAGCCCCGCCAAACACGCCCACCGCCTGCGCACTCGCCCCTGGGCAGTGAC
CGTCGATGGCGAGGTCAAGGCCGCCAAAACCTTTGCGATCGAGGATATTTTGAACTGGGCACCGCTCGAAGAGCGGATTT
ACCGGATGCGCTGTGTCGAGGGCTGGAGCGCGGTCGTGCCGTGGGTTGGTTTCCCCTTCAGTGAACTGCTCAAACGCGTC
GAAGTGACTGGCAATGCCAAGTTCGTCGAATTCTGGAGCCTGGCCGACCCAGAGCAGATGCCTTACATTCGCCTCCCCCT
TCTCGACTGGCCCTATCGTGAGGCTCTCCGACTCGACGAAGCGCGTCACCCACTGAGCATCATCGCCGTCGGCATGTACG
GCGAAGTCATGCCCAAACAGAATGGGGCGCCGCTGCGGCTGGTCATTCCATGGAAGTATGGGTTCAAGGGCGCAAAATCC
ATCGTTCGGATTCGTTTTGTCGAGAAACAACCCGAAACAACATGGATCAAGTCCTCCCCTGACGAGTATGGCTTTTACTC
CAACGTGAATCCGGATGTACCCCACAAGCGCTGGAGCCAGAGCCACGAACGGCGCCTTGGCGAATTCCTCAAGCGCAAGA
CCCTGCCTTTCAACGGCTATGCCGAACAAGTGGCTGGCCTGTATGCCGGCATGGATTTAAGGAAAAATTTCTGA

Upstream 100 bases:

>100_bases
GCGGACTTTCTGGCAGTCTGACATTCAGCCCTTGCCGGATTTTCTGTAAGGTTTTCGGGCGAATGCCGACTATTAGGCAT
TCCTACAGAAAGGAAACGCC

Downstream 100 bases:

>100_bases
CATGAGCTTTAACCCCGACGCCCGCCAACTGGGCTTGATCAAGATCGCCGTTTTCATCACTTGCCTGCTTCCCTTTGGGC
GTCTGCTATGGGCAGCCTAT

Product: putative sulfite oxidase subunit YedY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLIRRPAALPASEITDSAIYASRRDFIRTLLLGAGTAGFGLSYGADAGDRTGQSLGSLINSPFSLHDDKPTPFKSMTSYG
NFYEFGPDKESPAKHAHRLRTRPWAVTVDGEVKAAKTFAIEDILNWAPLEERIYRMRCVEGWSAVVPWVGFPFSELLKRV
EVTGNAKFVEFWSLADPEQMPYIRLPLLDWPYREALRLDEARHPLSIIAVGMYGEVMPKQNGAPLRLVIPWKYGFKGAKS
IVRIRFVEKQPETTWIKSSPDEYGFYSNVNPDVPHKRWSQSHERRLGEFLKRKTLPFNGYAEQVAGLYAGMDLRKNF

Sequences:

>Translated_317_residues
MLIRRPAALPASEITDSAIYASRRDFIRTLLLGAGTAGFGLSYGADAGDRTGQSLGSLINSPFSLHDDKPTPFKSMTSYG
NFYEFGPDKESPAKHAHRLRTRPWAVTVDGEVKAAKTFAIEDILNWAPLEERIYRMRCVEGWSAVVPWVGFPFSELLKRV
EVTGNAKFVEFWSLADPEQMPYIRLPLLDWPYREALRLDEARHPLSIIAVGMYGEVMPKQNGAPLRLVIPWKYGFKGAKS
IVRIRFVEKQPETTWIKSSPDEYGFYSNVNPDVPHKRWSQSHERRLGEFLKRKTLPFNGYAEQVAGLYAGMDLRKNF
>Mature_317_residues
MLIRRPAALPASEITDSAIYASRRDFIRTLLLGAGTAGFGLSYGADAGDRTGQSLGSLINSPFSLHDDKPTPFKSMTSYG
NFYEFGPDKESPAKHAHRLRTRPWAVTVDGEVKAAKTFAIEDILNWAPLEERIYRMRCVEGWSAVVPWVGFPFSELLKRV
EVTGNAKFVEFWSLADPEQMPYIRLPLLDWPYREALRLDEARHPLSIIAVGMYGEVMPKQNGAPLRLVIPWKYGFKGAKS
IVRIRFVEKQPETTWIKSSPDEYGFYSNVNPDVPHKRWSQSHERRLGEFLKRKTLPFNGYAEQVAGLYAGMDLRKNF

Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase

COG id: COG2041

COG function: function code R; Sulfite oxidase and related enzymes

Gene ontology:

Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yedY family [H]

Homologues:

Organism=Escherichia coli, GI1788282, Length=336, Percent_Identity=46.1309523809524, Blast_Score=288, Evalue=3e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000572
- InterPro:   IPR022867 [H]

Pfam domain/function: PF00174 Oxidored_molyb [H]

EC number: NA

Molecular weight: Translated: 36020; Mature: 36020

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIRRPAALPASEITDSAIYASRRDFIRTLLLGAGTAGFGLSYGADAGDRTGQSLGSLIN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC
SPFSLHDDKPTPFKSMTSYGNFYEFGPDKESPAKHAHRLRTRPWAVTVDGEVKAAKTFAI
CCCCCCCCCCCCHHHHHHCCCCEECCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHH
EDILNWAPLEERIYRMRCVEGWSAVVPWVGFPFSELLKRVEVTGNAKFVEFWSLADPEQM
HHHHCCCCHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCC
PYIRLPLLDWPYREALRLDEARHPLSIIAVGMYGEVMPKQNGAPLRLVIPWKYGFKGAKS
CEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHH
IVRIRFVEKQPETTWIKSSPDEYGFYSNVNPDVPHKRWSQSHERRLGEFLKRKTLPFNGY
EEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
AEQVAGLYAGMDLRKNF
HHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MLIRRPAALPASEITDSAIYASRRDFIRTLLLGAGTAGFGLSYGADAGDRTGQSLGSLIN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC
SPFSLHDDKPTPFKSMTSYGNFYEFGPDKESPAKHAHRLRTRPWAVTVDGEVKAAKTFAI
CCCCCCCCCCCCHHHHHHCCCCEECCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHH
EDILNWAPLEERIYRMRCVEGWSAVVPWVGFPFSELLKRVEVTGNAKFVEFWSLADPEQM
HHHHCCCCHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCC
PYIRLPLLDWPYREALRLDEARHPLSIIAVGMYGEVMPKQNGAPLRLVIPWKYGFKGAKS
CEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHH
IVRIRFVEKQPETTWIKSSPDEYGFYSNVNPDVPHKRWSQSHERRLGEFLKRKTLPFNGY
EEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
AEQVAGLYAGMDLRKNF
HHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Mo [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14500782 [H]