| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is atoS [C]
Identifier: 71905867
GI number: 71905867
Start: 249268
End: 251289
Strand: Reverse
Name: atoS [C]
Synonym: Daro_0225
Alternate gene names: 71905867
Gene position: 251289-249268 (Counterclockwise)
Preceding gene: 71905873
Following gene: 71905866
Centisome position: 5.58
GC content: 63.45
Gene sequence:
>2022_bases ATGCTTCTTGAAGACGCCTCTTCACCCACCACACCGCGCCACGAAATGTTGCAGGCCGGGCTGGACCTTCTCGACCAGGG CATTACCGTATTCGATGCCGATTTGCGGCTGGTCGCCTGGAACCGCAACTTCCTCAAGCTGCTCGATTTTCCGGAATCGC TGGCCTACATCGGCGCCCCTTTCGAGAGCTTTATCCGTTACAACGCCGAACGCGGCGAGTATGGTCCCGGCGATATCGAG TCCCAGATTACCGAGCGCGTGGCAGCCGCCCGGAATTTCACCCCCCACCTCACCGAGCGCCAGCGTCCGAATGGCCGGGT CCTGCTGCTGCGCGGCGAACCCTTGCCGCACAAGGGGCTGGTCACCCTGTACAGCGATATCACCGAACAACGCTATATCG AGCACCTGACCGAACATCAGAACATGCAGCTCGAGGAGCGCGTGCTCCGGCGTACCGCCCAGCTCGAGAACGCCAATGCC AACCTGCGCCTGGCCAACGAAGACAACGTCCGCATTGCCGCCGCACTGGGTCGCAGCGAGGCCCGCCTGCGGCTGATCAA CGACACCATCCCCATCCTGATCGGCTACGTGGACCAGCATGAGGTTTACCAGTACGCCAACAAGGGTTATGCGGACTGGT ATGGCCATCCGGAAGGCGGGGTCACCGGTCGGGGCGTACTCGATGTGATCGGCCCGCAGGTCTACGCCCAGGTTCGCGAC TTCGTGCACCGGGCCTTGGCCGGTCAGCAGGTCACTTACGAATACGAGATGGAACGCCAGGGCCAGAGCGTTTTTGCCCG CAGCACGCTGGTTCCGGAAATCAGCAGCGATGGCGAAACGCTGGGTTTCTTTGTCTTCTCGCACGAAATCACCGAACAGA AACGCATGCAGGCCGCGCTGGTCCAGGCCCAGAAAATGGAAGCCATCGGCCAACTGACCGGCGGCCTGGCCCACGACTTC AACAACCTGCTGACCGTCATCATCGGCAACCTGGCTGCCTTGCAGGATCACCGGCCGGACGATGCCGGCGTCAATGAGTT CGTCGAACCGGCCCTGCAATCGGCCCGGCGCGGCGTACAGCTGATCAAGCGCCTGCTCACCTTCTCGCGTCAACAGCCGC TGGAACCGCAGGCCGTCGACATTGGCCGCCTGATTGGCAGCCTGGCCAAGCTGGTCCGTCGCTCGCTACCAGAATCGATT GCCGTGTCGACCGATCTGGCCGGCGCCTCGATCCATGCCCTGGTTGATCCGGGACAGCTGGAAAGCGCCCTGCTCAACTT TGCCCTGAACTCGCGCGATGCCATGCCTGACGGTGGCCGACTGCACATCGCGGCGCGCGCCGTCGAGCTAACGACCGACG CCACCGCTTTCGATGTCTCGCCCGGCCATTACGTGCTGATCGAAGTCGCCGACAACGGTTGCGGCATGGATGCCGCCACC CTCTCCCGTGCCTGCGAACCCTTCTTCACGACCAAGCGCTTCGGGCTGGGCAGCGGCCTTGGCCTAGCCATGGCCTACGG CTTCGCCAAGCAGTCAGGCGGCGGCATTTCGATCCAGAGCCAGCCCGACCAGGGAACCTCGGTACTGATGGCGCTGCCGC TGGCTGCCCGGGAACCGGACATCGACCTGCCGGGCGAAGAGGCTGCCCTGCCTCACGGCGGCGAGCTGGTCCTGCTCGTC GAGGATGATCCGAATGTCCGCCGCGTCGTTCGCCAGCAACTGATCGACCTGGGCCACCCGGTCATCGAGGCAGAAGATGG CTCCCAGGCGCTCGACATGATCGATCAGATCCACGATATCGCCGTCGTCGTCAGCGATGTAATCATGCCCGGCGGCCTCA ATGGCCGGCAACTGGCGGAACAAACGCTGGCCCGGCGTCCGGAAATGCGCATCGTGCTGATGAGCGGTTATACCGATGAA GCCGAAACAGATGGCACCAGTGCGCTGCCCATTCTCGCCAAACCATTCGACCGCCAGGATCTGGCTCGCGCCCTGCAAAG CGCACACCGAGGCACGCCATGA
Upstream 100 bases:
>100_bases TTTCTTGAGAATGACAAAATACTTTTGCTGAACTATTGGCAGAATGTAACGAATCGTTACACCATGAAGTCAGCCGTGCC GCCTGAACTAGAATCGCCCG
Downstream 100 bases:
>100_bases AAGACAACGAATCCGCCAAGCTGATCGCCATTGTCGAGGACGATCCCGATGTCGCCAAGATCATTGAGCAGGTGCTCGGC GACTTCGGTTTCCGCACCTG
Product: PAS
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 673; Mature: 673
Protein sequence:
>673_residues MLLEDASSPTTPRHEMLQAGLDLLDQGITVFDADLRLVAWNRNFLKLLDFPESLAYIGAPFESFIRYNAERGEYGPGDIE SQITERVAAARNFTPHLTERQRPNGRVLLLRGEPLPHKGLVTLYSDITEQRYIEHLTEHQNMQLEERVLRRTAQLENANA NLRLANEDNVRIAAALGRSEARLRLINDTIPILIGYVDQHEVYQYANKGYADWYGHPEGGVTGRGVLDVIGPQVYAQVRD FVHRALAGQQVTYEYEMERQGQSVFARSTLVPEISSDGETLGFFVFSHEITEQKRMQAALVQAQKMEAIGQLTGGLAHDF NNLLTVIIGNLAALQDHRPDDAGVNEFVEPALQSARRGVQLIKRLLTFSRQQPLEPQAVDIGRLIGSLAKLVRRSLPESI AVSTDLAGASIHALVDPGQLESALLNFALNSRDAMPDGGRLHIAARAVELTTDATAFDVSPGHYVLIEVADNGCGMDAAT LSRACEPFFTTKRFGLGSGLGLAMAYGFAKQSGGGISIQSQPDQGTSVLMALPLAAREPDIDLPGEEAALPHGGELVLLV EDDPNVRRVVRQQLIDLGHPVIEAEDGSQALDMIDQIHDIAVVVSDVIMPGGLNGRQLAEQTLARRPEMRIVLMSGYTDE AETDGTSALPILAKPFDRQDLARALQSAHRGTP
Sequences:
>Translated_673_residues MLLEDASSPTTPRHEMLQAGLDLLDQGITVFDADLRLVAWNRNFLKLLDFPESLAYIGAPFESFIRYNAERGEYGPGDIE SQITERVAAARNFTPHLTERQRPNGRVLLLRGEPLPHKGLVTLYSDITEQRYIEHLTEHQNMQLEERVLRRTAQLENANA NLRLANEDNVRIAAALGRSEARLRLINDTIPILIGYVDQHEVYQYANKGYADWYGHPEGGVTGRGVLDVIGPQVYAQVRD FVHRALAGQQVTYEYEMERQGQSVFARSTLVPEISSDGETLGFFVFSHEITEQKRMQAALVQAQKMEAIGQLTGGLAHDF NNLLTVIIGNLAALQDHRPDDAGVNEFVEPALQSARRGVQLIKRLLTFSRQQPLEPQAVDIGRLIGSLAKLVRRSLPESI AVSTDLAGASIHALVDPGQLESALLNFALNSRDAMPDGGRLHIAARAVELTTDATAFDVSPGHYVLIEVADNGCGMDAAT LSRACEPFFTTKRFGLGSGLGLAMAYGFAKQSGGGISIQSQPDQGTSVLMALPLAAREPDIDLPGEEAALPHGGELVLLV EDDPNVRRVVRQQLIDLGHPVIEAEDGSQALDMIDQIHDIAVVVSDVIMPGGLNGRQLAEQTLARRPEMRIVLMSGYTDE AETDGTSALPILAKPFDRQDLARALQSAHRGTP >Mature_673_residues MLLEDASSPTTPRHEMLQAGLDLLDQGITVFDADLRLVAWNRNFLKLLDFPESLAYIGAPFESFIRYNAERGEYGPGDIE SQITERVAAARNFTPHLTERQRPNGRVLLLRGEPLPHKGLVTLYSDITEQRYIEHLTEHQNMQLEERVLRRTAQLENANA NLRLANEDNVRIAAALGRSEARLRLINDTIPILIGYVDQHEVYQYANKGYADWYGHPEGGVTGRGVLDVIGPQVYAQVRD FVHRALAGQQVTYEYEMERQGQSVFARSTLVPEISSDGETLGFFVFSHEITEQKRMQAALVQAQKMEAIGQLTGGLAHDF NNLLTVIIGNLAALQDHRPDDAGVNEFVEPALQSARRGVQLIKRLLTFSRQQPLEPQAVDIGRLIGSLAKLVRRSLPESI AVSTDLAGASIHALVDPGQLESALLNFALNSRDAMPDGGRLHIAARAVELTTDATAFDVSPGHYVLIEVADNGCGMDAAT LSRACEPFFTTKRFGLGSGLGLAMAYGFAKQSGGGISIQSQPDQGTSVLMALPLAAREPDIDLPGEEAALPHGGELVLLV EDDPNVRRVVRQQLIDLGHPVIEAEDGSQALDMIDQIHDIAVVVSDVIMPGGLNGRQLAEQTLARRPEMRIVLMSGYTDE AETDGTSALPILAKPFDRQDLARALQSAHRGTP
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=261, Percent_Identity=27.2030651340996, Blast_Score=96, Evalue=5e-21, Organism=Escherichia coli, GI1790436, Length=367, Percent_Identity=26.9754768392371, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI87081816, Length=207, Percent_Identity=29.951690821256, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1788713, Length=363, Percent_Identity=26.4462809917355, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1790300, Length=232, Percent_Identity=27.5862068965517, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 73659; Mature: 73659
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLEDASSPTTPRHEMLQAGLDLLDQGITVFDADLRLVAWNRNFLKLLDFPESLAYIGAP CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCCHHHHHCCCHHHHHHCCC FESFIRYNAERGEYGPGDIESQITERVAAARNFTPHLTERQRPNGRVLLLRGEPLPHKGL HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEECCCCCCCCH VTLYSDITEQRYIEHLTEHQNMQLEERVLRRTAQLENANANLRLANEDNVRIAAALGRSE HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCC ARLRLINDTIPILIGYVDQHEVYQYANKGYADWYGHPEGGVTGRGVLDVIGPQVYAQVRD CEEEEECCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHH FVHRALAGQQVTYEYEMERQGQSVFARSTLVPEISSDGETLGFFVFSHEITEQKRMQAAL HHHHHHCCCCEEEEEHHHHCCHHHHHHHHCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH VQAQKMEAIGQLTGGLAHDFNNLLTVIIGNLAALQDHRPDDAGVNEFVEPALQSARRGVQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH LIKRLLTFSRQQPLEPQAVDIGRLIGSLAKLVRRSLPESIAVSTDLAGASIHALVDPGQL HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCEEEEEECCHHH ESALLNFALNSRDAMPDGGRLHIAARAVELTTDATAFDVSPGHYVLIEVADNGCGMDAAT HHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCEEEECCCCCEEEEEEECCCCCCCHHH LSRACEPFFTTKRFGLGSGLGLAMAYGFAKQSGGGISIQSQPDQGTSVLMALPLAAREPD HHHHCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEEECCCCCCCC IDLPGEEAALPHGGELVLLVEDDPNVRRVVRQQLIDLGHPVIEAEDGSQALDMIDQIHDI CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHH AVVVSDVIMPGGLNGRQLAEQTLARRPEMRIVLMSGYTDEAETDGTSALPILAKPFDRQD HHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHCCCCCHHH LARALQSAHRGTP HHHHHHHHHCCCC >Mature Secondary Structure MLLEDASSPTTPRHEMLQAGLDLLDQGITVFDADLRLVAWNRNFLKLLDFPESLAYIGAP CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCCHHHHHCCCHHHHHHCCC FESFIRYNAERGEYGPGDIESQITERVAAARNFTPHLTERQRPNGRVLLLRGEPLPHKGL HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEECCCCCCCCH VTLYSDITEQRYIEHLTEHQNMQLEERVLRRTAQLENANANLRLANEDNVRIAAALGRSE HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCC ARLRLINDTIPILIGYVDQHEVYQYANKGYADWYGHPEGGVTGRGVLDVIGPQVYAQVRD CEEEEECCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHH FVHRALAGQQVTYEYEMERQGQSVFARSTLVPEISSDGETLGFFVFSHEITEQKRMQAAL HHHHHHCCCCEEEEEHHHHCCHHHHHHHHCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH VQAQKMEAIGQLTGGLAHDFNNLLTVIIGNLAALQDHRPDDAGVNEFVEPALQSARRGVQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH LIKRLLTFSRQQPLEPQAVDIGRLIGSLAKLVRRSLPESIAVSTDLAGASIHALVDPGQL HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCEEEEEECCHHH ESALLNFALNSRDAMPDGGRLHIAARAVELTTDATAFDVSPGHYVLIEVADNGCGMDAAT HHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCEEEECCCCCEEEEEEECCCCCCCHHH LSRACEPFFTTKRFGLGSGLGLAMAYGFAKQSGGGISIQSQPDQGTSVLMALPLAAREPD HHHHCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEEECCCCCCCC IDLPGEEAALPHGGELVLLVEDDPNVRRVVRQQLIDLGHPVIEAEDGSQALDMIDQIHDI CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHH AVVVSDVIMPGGLNGRQLAEQTLARRPEMRIVLMSGYTDEAETDGTSALPILAKPFDRQD HHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHCCCCCHHH LARALQSAHRGTP HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA