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The map label for this gene is yvrC [H]

Identifier: 71905779

GI number: 71905779

Start: 151221

End: 152012

Strand: Reverse

Name: yvrC [H]

Synonym: Daro_0137

Alternate gene names: 71905779

Gene position: 152012-151221 (Counterclockwise)

Preceding gene: 71905780

Following gene: 71905778

Centisome position: 3.38

GC content: 60.98

Gene sequence:

>792_bases
ATGCCCCGCCTGCCCCAACGCATCGTCTGCCTGACCACCGAAACTGTCGAAGTGCTCTACGCCCTTGGCGAGCAGGACCG
CATCGTCGGCATTTCCGGCTATACCGTTCGACCGCCCGAAGCCCGCAAGGAAAAACCGAAGGTCTTTGCCTTCACCAGCG
GCGACATCGACAAGATTCTCGCCACCCAGCCCGATCTGGTGCTGACCTTTTCCGATCTGCAAAGCGAGATTTCGCGCGAC
CTGATCAAAGCAGGCATCCCGGTCTATGCCTTCAACACCCGCAGCATCGAGGACATCCTCGGCATGGTCGAAACCGTCGG
CCGGCTGGTCGGGGCCGAGGCCAAAGCGCTGAAAATCGTCGCCGGACTGGAAGCAGAAATTGAAAAAGCCCGCGCCATCG
CCGCCGAACGCTTCGCCCGCACCGGCAAAAAGCCACGCGTCTATTTCGAGGAATGGGACGAGCCGCTGATCAGCAGCATC
CGCTGGGCCTCGGAGCTGATCGAAATCGCCGGCGGTGAGGATATTTTCGCCGAACAGGCCCGCTCACCGCTGGCCAAGGA
TCGCCGCCCAGCGCCTGAAGCGGTCATTGCCGCAGCGCCGGACATCATCATCGGCTCATGGTGCGGCAAGCACTTCCGCC
CTGAACGCGTTGCCGCCCGCCCTGGCTGGGAAAGCATTCCGGCCGTCCGCAATGGGAAAATGCACGAAATCAAATCGGCA
ATTATTCTGACCCCAGGCCCCGTTGCAATCAGCGAAGGCCTGCCGCAATTGCTCGACATTTTTGATCTGTGA

Upstream 100 bases:

>100_bases
GACATCATGCAGCGCCATACGCCGCGCATCCTGGACGGCACCGAGAAACTTTGCGCCCACCTCGATGTCGCAAGAAGCCA
CCGCCCCGCCAAATAAAACC

Downstream 100 bases:

>100_bases
AAAGGCCGTGACCGGCCCATTGCCTATAATCGTCGTCCAAACTAAAGGATTCCGACCATGAAGATCGTTGCTCCGCTCCT
CGCCCTGATCCTTGCTACTT

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MPRLPQRIVCLTTETVEVLYALGEQDRIVGISGYTVRPPEARKEKPKVFAFTSGDIDKILATQPDLVLTFSDLQSEISRD
LIKAGIPVYAFNTRSIEDILGMVETVGRLVGAEAKALKIVAGLEAEIEKARAIAAERFARTGKKPRVYFEEWDEPLISSI
RWASELIEIAGGEDIFAEQARSPLAKDRRPAPEAVIAAAPDIIIGSWCGKHFRPERVAARPGWESIPAVRNGKMHEIKSA
IILTPGPVAISEGLPQLLDIFDL

Sequences:

>Translated_263_residues
MPRLPQRIVCLTTETVEVLYALGEQDRIVGISGYTVRPPEARKEKPKVFAFTSGDIDKILATQPDLVLTFSDLQSEISRD
LIKAGIPVYAFNTRSIEDILGMVETVGRLVGAEAKALKIVAGLEAEIEKARAIAAERFARTGKKPRVYFEEWDEPLISSI
RWASELIEIAGGEDIFAEQARSPLAKDRRPAPEAVIAAAPDIIIGSWCGKHFRPERVAARPGWESIPAVRNGKMHEIKSA
IILTPGPVAISEGLPQLLDIFDL
>Mature_262_residues
PRLPQRIVCLTTETVEVLYALGEQDRIVGISGYTVRPPEARKEKPKVFAFTSGDIDKILATQPDLVLTFSDLQSEISRDL
IKAGIPVYAFNTRSIEDILGMVETVGRLVGAEAKALKIVAGLEAEIEKARAIAAERFARTGKKPRVYFEEWDEPLISSIR
WASELIEIAGGEDIFAEQARSPLAKDRRPAPEAVIAAAPDIIIGSWCGKHFRPERVAARPGWESIPAVRNGKMHEIKSAI
ILTPGPVAISEGLPQLLDIFDL

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 28891; Mature: 28760

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLPQRIVCLTTETVEVLYALGEQDRIVGISGYTVRPPEARKEKPKVFAFTSGDIDKIL
CCCCCCEEEEEEHHHHHHHHHHCCCCCEEEECCCEECCCHHHCCCCCEEEEECCCHHHHH
ATQPDLVLTFSDLQSEISRDLIKAGIPVYAFNTRSIEDILGMVETVGRLVGAEAKALKIV
CCCCCEEEEHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHH
AGLEAEIEKARAIAAERFARTGKKPRVYFEEWDEPLISSIRWASELIEIAGGEDIFAEQA
HCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
RSPLAKDRRPAPEAVIAAAPDIIIGSWCGKHFRPERVAARPGWESIPAVRNGKMHEIKSA
CCCHHHCCCCCCCHHHHCCCCCEEECHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHCEE
IILTPGPVAISEGLPQLLDIFDL
EEECCCCHHHHHCHHHHHHHHCC
>Mature Secondary Structure 
PRLPQRIVCLTTETVEVLYALGEQDRIVGISGYTVRPPEARKEKPKVFAFTSGDIDKIL
CCCCCEEEEEEHHHHHHHHHHCCCCCEEEECCCEECCCHHHCCCCCEEEEECCCHHHHH
ATQPDLVLTFSDLQSEISRDLIKAGIPVYAFNTRSIEDILGMVETVGRLVGAEAKALKIV
CCCCCEEEEHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHH
AGLEAEIEKARAIAAERFARTGKKPRVYFEEWDEPLISSIRWASELIEIAGGEDIFAEQA
HCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
RSPLAKDRRPAPEAVIAAAPDIIIGSWCGKHFRPERVAARPGWESIPAVRNGKMHEIKSA
CCCHHHCCCCCCCHHHHCCCCCEEECHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHCEE
IILTPGPVAISEGLPQLLDIFDL
EEECCCCHHHHHCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]