| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is yjjL [C]
Identifier: 71905677
GI number: 71905677
Start: 41511
End: 42728
Strand: Reverse
Name: yjjL [C]
Synonym: Daro_0035
Alternate gene names: 71905677
Gene position: 42728-41511 (Counterclockwise)
Preceding gene: 71905678
Following gene: 71905669
Centisome position: 0.95
GC content: 62.4
Gene sequence:
>1218_bases GTGACTCACCCCGACACCCGAAGCCTGTGGATCAGGCTATTCCTGCCTTTTGCCGCCGGCTACTTCCTCTCCTACCTGTT CCGCACCGTCAACGCGATCATCGGACCGGTTCTGGCGCGCGAACTTGGCCTTGGCGACAACGCGCTCGGCTTGCTGACCA GCACCTACTTTCTGGCCTTCGGCCTGGCGCAGTTGCCGCTCGGCATGCTGCTCGACCGCTTCGGGCCCCGTCGGGTCGAA GCCGGTCTGCTGGTCATCGCCGCCAGTGGTGCTGCCGTATTTTCAATATCGGATGGGCTGGGCGGGCTGGCCATCGGCCG GGCGCTGATCGGCCTAGGTGTTTCAGCCTGTCTGATGGCCTCGTTCAAAGCCTTTTCACAATGGTTCCCCCCTGAGCGCC AAGCCTCGCTGACCGGCTGGGTCATGGCCTCCGGCGGCTTGGGCGCGCTGGCTGCGACCAAGCCTCTGGAAATGCTGCTG GGGTTTACCGGCTGGCGGGAAATCGCCTTTGCGCTCGCTGTGGTTACCCTGATCGTTGCGGGCATCCTGTGGCTGAAAGT ACCGGACAAGGCCACGGAACAGAAGGGCGCCGGCCTTGCCGAGCAGTTGGCGGGAGTCCGGACTATTTTTGCCAGCCGCC ACTTCTGGCGCTATGCCCCGATGGGCTTCTTCTTCACCGGAGGCTTCTTGGCGGTGCAGGGCTTATGGGTCTCGCGCTGG ATGACAGTGCTGGAAGGCATGGAACACACAGCCATTGCCACCCGCCTGACCTGGATCAGCGGCGCCATGCTGGCTGGCTT CCTGTTCATGGGCTTTTTCGCCACCACCCTCGTTCGACATGGATTGAAACTGGAACGAATTTATCTCGGCGCGATGAGCA TAGCACTGGCCTGCTTTGCACTGATCAGCAGCCTGCCAACCGTCGCCGGTAATCTGTTTTGGCCGATACTCGGTATCTGT TTTTCGCTGTCCAATATTTCCTACTCGCTGGTTAGCCAGGCATTTCCACCCGCCGTCTCCGGTCGGGCCAACACCGCGCT CAATCTGCTGGTCTTCGCCGGGGCCTTTGGCCTGCAATGGGGCATCGGCAGTTCCGTCGATGCCCTCCAGGCCAATGGCT GGGCTGGCGATACGGCCTACCGTAGCGCCTTCTTTGCGCTGCTAGGCGGCCAGACTCTGGCCCTCGGCTGGCTTCTGCTG TCCGCCCGGCGCAACTGA
Upstream 100 bases:
>100_bases ACTGGAAACAAAAGATCACGACGCGTCTCGAGTGGCTCCGCAAAAATCCACAAGTATTGCCACCACAGTCACCGGCGTTT CACGTGAAACCGGAGAATCC
Downstream 100 bases:
>100_bases CACGGCAAGGTCGACCTGTTGCAGATGGCCGACCTCGCCGGCTTCGGTCAGATAGACGCCGGCCGCCCGGATTTGCCCCA GCAACTCGTTATCTTCAGTT
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Transporter; Facilitator Family Transporter; Transporter MFS Superfamily; Sugar Phosphate Permease; Facilitator Superfamily Permease; Permease; Nitrate Transporter; Facilitator Family Transporter Transporter; Transporter Facilitator Family; Facilitator Family Oxalate/Formate Antiporter; Sugar Transport Family Protein; Transporter MFS Family; Facilitator Protein Family Permease; MFS Transporter; Facilitator Membrane Proteins; Carbohydrate Transport Membrane Protein; Intraphagosomal Amino Acid Transporter Family Protein; Facilitator Family Hexuronate Transporter; Transport Proteins; MFS Family Transporter; Facilitator Family Protein
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MTHPDTRSLWIRLFLPFAAGYFLSYLFRTVNAIIGPVLARELGLGDNALGLLTSTYFLAFGLAQLPLGMLLDRFGPRRVE AGLLVIAASGAAVFSISDGLGGLAIGRALIGLGVSACLMASFKAFSQWFPPERQASLTGWVMASGGLGALAATKPLEMLL GFTGWREIAFALAVVTLIVAGILWLKVPDKATEQKGAGLAEQLAGVRTIFASRHFWRYAPMGFFFTGGFLAVQGLWVSRW MTVLEGMEHTAIATRLTWISGAMLAGFLFMGFFATTLVRHGLKLERIYLGAMSIALACFALISSLPTVAGNLFWPILGIC FSLSNISYSLVSQAFPPAVSGRANTALNLLVFAGAFGLQWGIGSSVDALQANGWAGDTAYRSAFFALLGGQTLALGWLLL SARRN
Sequences:
>Translated_405_residues MTHPDTRSLWIRLFLPFAAGYFLSYLFRTVNAIIGPVLARELGLGDNALGLLTSTYFLAFGLAQLPLGMLLDRFGPRRVE AGLLVIAASGAAVFSISDGLGGLAIGRALIGLGVSACLMASFKAFSQWFPPERQASLTGWVMASGGLGALAATKPLEMLL GFTGWREIAFALAVVTLIVAGILWLKVPDKATEQKGAGLAEQLAGVRTIFASRHFWRYAPMGFFFTGGFLAVQGLWVSRW MTVLEGMEHTAIATRLTWISGAMLAGFLFMGFFATTLVRHGLKLERIYLGAMSIALACFALISSLPTVAGNLFWPILGIC FSLSNISYSLVSQAFPPAVSGRANTALNLLVFAGAFGLQWGIGSSVDALQANGWAGDTAYRSAFFALLGGQTLALGWLLL SARRN >Mature_404_residues THPDTRSLWIRLFLPFAAGYFLSYLFRTVNAIIGPVLARELGLGDNALGLLTSTYFLAFGLAQLPLGMLLDRFGPRRVEA GLLVIAASGAAVFSISDGLGGLAIGRALIGLGVSACLMASFKAFSQWFPPERQASLTGWVMASGGLGALAATKPLEMLLG FTGWREIAFALAVVTLIVAGILWLKVPDKATEQKGAGLAEQLAGVRTIFASRHFWRYAPMGFFFTGGFLAVQGLWVSRWM TVLEGMEHTAIATRLTWISGAMLAGFLFMGFFATTLVRHGLKLERIYLGAMSIALACFALISSLPTVAGNLFWPILGICF SLSNISYSLVSQAFPPAVSGRANTALNLLVFAGAFGLQWGIGSSVDALQANGWAGDTAYRSAFFALLGGQTLALGWLLLS ARRN
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43210; Mature: 43079
Theoretical pI: Translated: 10.33; Mature: 10.33
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHPDTRSLWIRLFLPFAAGYFLSYLFRTVNAIIGPVLARELGLGDNALGLLTSTYFLAF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH GLAQLPLGMLLDRFGPRRVEAGLLVIAASGAAVFSISDGLGGLAIGRALIGLGVSACLMA HHHHCCHHHHHHCCCCCEECCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH SFKAFSQWFPPERQASLTGWVMASGGLGALAATKPLEMLLGFTGWREIAFALAVVTLIVA HHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH GILWLKVPDKATEQKGAGLAEQLAGVRTIFASRHFWRYAPMGFFFTGGFLAVQGLWVSRW HHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHH MTVLEGMEHTAIATRLTWISGAMLAGFLFMGFFATTLVRHGLKLERIYLGAMSIALACFA HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LISSLPTVAGNLFWPILGICFSLSNISYSLVSQAFPPAVSGRANTALNLLVFAGAFGLQW HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC GIGSSVDALQANGWAGDTAYRSAFFALLGGQTLALGWLLLSARRN CCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC >Mature Secondary Structure THPDTRSLWIRLFLPFAAGYFLSYLFRTVNAIIGPVLARELGLGDNALGLLTSTYFLAF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH GLAQLPLGMLLDRFGPRRVEAGLLVIAASGAAVFSISDGLGGLAIGRALIGLGVSACLMA HHHHCCHHHHHHCCCCCEECCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH SFKAFSQWFPPERQASLTGWVMASGGLGALAATKPLEMLLGFTGWREIAFALAVVTLIVA HHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH GILWLKVPDKATEQKGAGLAEQLAGVRTIFASRHFWRYAPMGFFFTGGFLAVQGLWVSRW HHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHH MTVLEGMEHTAIATRLTWISGAMLAGFLFMGFFATTLVRHGLKLERIYLGAMSIALACFA HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LISSLPTVAGNLFWPILGICFSLSNISYSLVSQAFPPAVSGRANTALNLLVFAGAFGLQW HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC GIGSSVDALQANGWAGDTAYRSAFFALLGGQTLALGWLLLSARRN CCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA